Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02895 ATGGCACCCTGCAGAAAAAAAGATGGACCAACTAAGAAAACAATGAATAGAGGATCTTGGACCCCAGACGAAGATCAAAAGCTAGCTCATTGCATTCGAACTCATGGTGCCAAGAAATGGAAAACTGTTTCTGCCAAATCAGGTTTGAATAGGTGTGGAAAGAGTTGTAGGTTAAGATGGTTGAATTATCTTAGACCCAATATTAAGAGAGGCAACATTTCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCTAGTCACATTGAGGAAAAACCAGAAACTTCCACAACACAAGAAACTATAGTTCAAGACAATATTATGGGGGATAGTGTTATGTTAGAGAATAAATATTCAATTAGTGGAAGTGTCGATTCAGATGTTCTCTTTGATGTGAATGAATTCTTAGACTTTTCTGCTGATGAACCATATGAGTTTGATTGGGTGAATAAACTCTTGGAATTTGAGCAGATTCAGTTTCCTGAGAACACAAATATCTGA 600 0.375 MAPCRKKDGPTKKTMNRGSWTPDEDQKLAHCIRTHGAKKWKTVSAKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIVQDNIMGDSVMLENKYSISGSVDSDVLFDVNEFLDFSADEPYEFDWVNKLLEFEQIQFPENTNI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02895 199 CDD SANT 74 115 IPR001005 -
Vifa4g02895 199 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vifa4g02895 199 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vifa4g02895 199 Gene3D - 10 70 - -
Vifa4g02895 199 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g02895 199 Gene3D - 72 140 - -
Vifa4g02895 199 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vifa4g02895 199 SMART sant 69 117 IPR001005 -
Vifa4g02895 199 SMART sant 16 66 IPR001005 -
Vifa4g02895 199 CDD SANT 19 64 IPR001005 -
Vifa4g02895 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 127 - -
Vifa4g02895 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vifa4g02895 199 FunFam MYB-related transcription factor 16 69 - -
Vifa4g02895 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vifa4g02895 199 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Vifa4g02895 199 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02895 Vifa-Chr4 929850486 929851304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02895 4 168 MYB Transcription Factor Family AT5G52600 50.299 2.05e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g02895 Myb_DNA-binding 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02895 K09422 - gmx:100799575 269.626