Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02887 ATGGTTGAAAAGGAAGATTTGGCTTTGAGTCTAGGCTTGAACTTCTTTCACAAACCTCACCCTCTCAATCTCATCTCTTCCTCAGTACGAGGAATCGACGTCAATCGCTTACCATCAACCGTTGCCGAACACGAAGAAGAAGAAGAAGAAACAGGAGTTTCATCTCCGAACAGCACTGTTTCAAGCGTTAGTGGAAAACGAAGCGAGAGAGAAGGAGGAAATATCAGTGACGACGAAGACGCTGAAACCGCTAGAAAAAAACTCAGACTCTCAAAAAACCAATCAGCTATTCTCGAAGAAACTTTCAATCAACACAATACCCTTAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTTCAAAATAGAAGAGCTAGGACAAAGCTGAAGCAAACGGAGGTTGATTGTGAGGTGTTGAAACGGTGTTGCGAAAATCTAACGGATGAAAATAGAAGACTACATAAGGAAGTTCAAGAGCTGAGAGCACTGAAACTTTCCCCTCAATTTTATATGCAAATGACTCCACCAACTACTCTTACTATGTGCCCTTCTTGTGAGCGCGTGGCTGTTCCTTCTTCTGGTGTTGATACCATCGCTCAAGCCCAAGCCCAAGCCCATCATCGGGCTGTACATATGAGCCCGTGGGCTTCTGCTGCTGCTCCTGCGCGTAGGATGTTTGATGTTTTTCGTCAATGA 729 0.4472 MVEKEDLALSLGLNFFHKPHPLNLISSSVRGIDVNRLPSTVAEHEEEEEETGVSSPNSTVSSVSGKRSEREGGNISDDEDAETARKKLRLSKNQSAILEETFNQHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLHKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDTIAQAQAQAHHRAVHMSPWASAAAPARRMFDVFRQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02887 242 Coils Coil 140 174 - -
Vifa4g02887 242 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Vifa4g02887 242 FunFam Homeobox-leucine zipper protein 18 70 146 - -
Vifa4g02887 242 MobiDBLite consensus disorder prediction 53 69 - -
Vifa4g02887 242 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Vifa4g02887 242 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Vifa4g02887 242 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Vifa4g02887 242 CDD homeodomain 85 142 IPR001356 GO:0003677
Vifa4g02887 242 MobiDBLite consensus disorder prediction 70 86 - -
Vifa4g02887 242 Gene3D - 89 139 - -
Vifa4g02887 242 SMART HOX_1 83 145 IPR001356 GO:0003677
Vifa4g02887 242 Pfam Homeodomain 85 139 IPR001356 GO:0003677
Vifa4g02887 242 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Vifa4g02887 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 27 215 - -
Vifa4g02887 242 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Vifa4g02887 242 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Vifa4g02887 242 Pfam HD-ZIP protein N terminus 27 71 IPR006712 GO:0005634
Vifa4g02887 242 MobiDBLite consensus disorder prediction 40 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02887 Vifa-Chr4 924071334 924072341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02887 1 241 Homeobox Transcription Factor Family AT4G16780 57.785 8.31e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g02887 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02887 K09338 - gmx:100813367 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07674 1 1194299075 1194300252 Vifa4g02887 4 924071334 924072341 PCT