Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02881 ATGCGTATCGAGGAATTGAAAGGAGGTGAAATTGAAGAAGGTGGAGAGGAAGGGAAATGGAGCTTTGTTGGTTCCGATACGAAGAGGGTTTTGGTTGGAGCAGGGGCTCGAGCGCTATTCTATCCCACGCTTGTTTATAATGTCGTTAGGAATAGGCTTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTTGTATTGTTAGGTGCGGTTCCATTTCCTATTGATGTTCCTCGCTTGAAAGATCTTGGTGTCCGTGGGGTCATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACATTATATCATGCTCATGGGATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCACCACTAAATGACATACGCCGCGCTGTTGATTTCATACATAAAAATGCATTGTCTGGACGCACTACATATGTGCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAATTGATGTCACCTGATGCTGCATATGAATATGTAAAGTCAATTCGGCCAAGGGTGCTTTTAGCTTCCTCTCAGTGGCGAGCTGTCCAGGACTACTACCGTCACCTTATTATGAGGAGGATTGTTGGGTTTTCGCCTGCAGCTGATCTATTTGTAAAGGCTTCTAAGGTCACAGCAGCTTCACAAGATCTTGTAAAATTTGATGACAATTCTGTAGTCTTGGTAACAGAGAAAGATCTTGAAGGATACGACCCAAATTGTCAATCAGTAACCATGTCAAGTGAAATATGGGCAGATTTGAGTGTTGTTTATCGTGTGCGAGTTGCTGGAGAGGCCGCATTTGCAAGAATATCATGCCTTTGGCTGCGATATGGTACCGACCAGAAGATTTCTGCAGAAAAACTAAGCAGAGAGAGCAGTTGCTCCATCAGAACGAATCACTTGGGAGGAATTAGTGTTGACATCCATGTGTACTGA 981 0.4393 MRIEELKGGEIEEGGEEGKWSFVGSDTKRVLVGAGARALFYPTLVYNVVRNRLQAEFRWWDKVDEFVLLGAVPFPIDVPRLKDLGVRGVITLNESYETLVPTTLYHAHGIDHLVIPTRDYCFAPPLNDIRRAVDFIHKNALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMSPDAAYEYVKSIRPRVLLASSQWRAVQDYYRHLIMRRIVGFSPAADLFVKASKVTAASQDLVKFDDNSVVLVTEKDLEGYDPNCQSVTMSSEIWADLSVVYRVRVAGEAAFARISCLWLRYGTDQKISAEKLSRESSCSIRTNHLGGISVDIHVY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02881 326 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Vifa4g02881 326 CDD PTPMT1 59 203 IPR044596 GO:0004721
Vifa4g02881 326 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Vifa4g02881 326 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Vifa4g02881 326 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 295 - -
Vifa4g02881 326 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Vifa4g02881 326 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 205 IPR029021 -
Vifa4g02881 326 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vifa4g02881 326 Pfam Dual specificity phosphatase, catalytic domain 83 202 IPR000340 GO:0008138|GO:0016311
Vifa4g02881 326 FunFam Dual specificity phosphatase domain protein 59 206 - -
Vifa4g02881 326 SMART ptp_7 101 206 IPR003595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02881 Vifa-Chr4 922548502 922550921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02881 4 326 Protein tyrosine phosphatase (PTP) family AT2G35680 56.805 7.41e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02881 - - gmx:100790413 540.806