Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02876 ATGGCTAATGCAGAAGAAGTTTCAGCTCTTAAAAGCATCAAATTGCATCTCCTTGGTGAATTTTCACCGCTTCCATCTCCAATTTCACAACCTTGGAGTTTAGATTTTGATTTTCAGTTTCAAACCAACTCTTCCACTTTTGACTCATCGATATTTTTAGATCGATATTTCAACCATTTTCTCGAAAAAGAATCACATATTCCAATCTTTGAATTTGACTCCAATACTCAAGCAACTGAACCTGCTAGTCCTGAGGCTCTAATTTCTCACCCTCAAACAACAACAGTAGAGAAGAAGCCTCAACTGAATCGTAAACCGTCGCTGAAAATTGCTCTTCCAAATAAAACCGAATGGATCCAATTCGGAAACCCGGAGGTGGCTGTACAAAAACCGGAAGTTGTTGAGAAACAGCACTACAGAGGAGTTAGACAGAGACCATGGGGAAAGTTCGCCGCCGAGATCCGCGACCCTAACAAACGTGGCTCAAGAGTTTGGCTTGGAACTTTCGAAACGGCTATCGAAGCCGCTAAAGCCTACGATCGCGCCGCTTTTAGGCTTCGTGGATCCAAAGCGATTCTCAACTTTCCACTGGAAGTCAACGCCATGGCGGCGGAGGCGGCGGAGGCGGTGGAGAACTCCGGCGATAACAAAAAACGTTGCCGTGAAGAGGAAGATGTAGTGGTGGTGAAAAAGGAGAAAACAGAGGAATTTGATGTCAACTGTATTAAAGATCTGCCGTTAACGCCGTCAGCTTGGACTGGGTTTTGGGATGGTGATTTTAAGGGGGTTCCACCGTTGTCGCCGCTATCTTCCTTTTGTTTTTCACCTTTAGTGGCTGTGTGA 843 0.452 MANAEEVSALKSIKLHLLGEFSPLPSPISQPWSLDFDFQFQTNSSTFDSSIFLDRYFNHFLEKESHIPIFEFDSNTQATEPASPEALISHPQTTTVEKKPQLNRKPSLKIALPNKTEWIQFGNPEVAVQKPEVVEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVNAMAAEAAEAVENSGDNKKRCREEEDVVVVKKEKTEEFDVNCIKDLPLTPSAWTGFWDGDFKGVPPLSPLSSFCFSPLVAV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02876 280 PANTHER DNA-BINDING DOMAIN 101 213 IPR044808 GO:0003700|GO:0009873
Vifa4g02876 280 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700|GO:0006355
Vifa4g02876 280 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 CDD AP2 137 196 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 FunFam Ethylene-responsive transcription factor 2 137 198 - -
Vifa4g02876 280 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
Vifa4g02876 280 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02876 Vifa-Chr4 920643212 920644054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02876 1 270 AP2-EREBP Transcription Factor Family AT4G17490 47.535 5.33e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g02876 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02876 K09286 - gmx:100800453 306.219