Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02875 ATGTATGGAAACAATAATTTTGATTCCGATTTTGCCCTTTTAGACTCTATTCGCCGTCACTTGTTGGGTGAGTCCGAATCTATATTCGGAGCTCCAACAATATCTAATACGAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGCTTATATCCATGTTTGAGTGATAACTGGGGCGATTTACCACTCAAGGAAGATGATTCTGAAGATATGTTGCTTTACGGCGTCCTCCGAGACGCCATAAACGTCGGGTGGGTTCCGTCTCTCGAAGTCGGGTCACCCGAGAGCATTTCATCGGGTTTTCCGTTGGAGTTGGTGAAACCGGAGCCAGATATTATGCCGGTAGAGAATATTATTCCTGCGGTGGTCCCTGCGAAGGTTCAAGTGGTTCCGAAAGGGCCGAAAGCTGCCCCGGTTAAAGGTAAGCACTACCGCGGGGTGAGACAACGGCCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGGCTAAGAACGGAGCTAGGGTTTGGCTTGGAACATTTGAAACCGCTGAGGATGCAGCGTTGGCTTACGATAGAGCTGCGTATAGGATGAGAGGTTCGAGAGCTTTGCTGAATTTTCCTCTTCGGGTTAACTCCGGTGAACCCGACCCGGTAAGGATTACTTCTAAACGATCTTCACCGGAACGTTCTTCATCGTCGGAAAGTAATTCTCCGGCGAAGAAGAAGAAGGTAATGGAAGGTCAAGTGGCCCAGTTGACACGTGGAGGACAGTTGTTGGTTTCTTAA 771 0.4942 MYGNNNFDSDFALLDSIRRHLLGESESIFGAPTISNTNTRVFSRSSSFSSLYPCLSDNWGDLPLKEDDSEDMLLYGVLRDAINVGWVPSLEVGSPESISSGFPLELVKPEPDIMPVENIIPAVVPAKVQVVPKGPKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRSSPERSSSSESNSPAKKKKVMEGQVAQLTRGGQLLVS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02875 256 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 PANTHER DNA-BINDING DOMAIN 135 235 IPR044808 GO:0003700|GO:0009873
Vifa4g02875 256 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Vifa4g02875 256 MobiDBLite consensus disorder prediction 209 256 - -
Vifa4g02875 256 FunFam Ethylene-responsive transcription factor 2 143 203 - -
Vifa4g02875 256 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Vifa4g02875 256 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02875 Vifa-Chr4 919762992 919763762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02875 9 255 AP2-EREBP Transcription Factor Family AT4G17500 53.929 2.02e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g02875 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02875 K09286 - gmx:100803653 305.064