Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02872 ATGATAGATGAAGCAGCGGCAAAATTCTTACAGCAAGGTTGTGATGGATCAATATTACTAGATGGTGGTGCTGATACTGAAAAGTTTGCTTTTCCTAATGTGAACTCTGTTAGAGGATTTGATGTTATTGATACAATCAAAACTTCAGTGGAGAGTGCTTGTAGCGGTGTTGTCTCATGTGCTGATATAGTTGCCATAGCTGCCAGAGATTCTGTCCTCCTTAGTGGTAGTCCTTCATGGAATGTTCTATTAGGACGAAGAGATGGATCAGTCTCAAATGCATCTCTAGCAAATGTGGTTCTTCCTTCTCCATTTGATCCACTAGCTACTATTGTTTCAAAGTTTAATAATGTAGGACTCAATCTCACAGATGTTGTTTCTTTATCCGGTGCTCATACAGTTGGGAGAGCAAGGTGTGCACTATTTAGCAACAGATTATTCAATTTTTCTGGAACGGGTTCACCGGACAGTACACTAGACACTTCCATGCTTTCTGACCTACAAAATCTCTGTCCTCAAACCGGTGATGGAAACACGACTGCTGTTCTTGATAGAAACTCATCTGATGCATTTGACAATCATTACTATAAGAACTTGCTCAACGGAAAGGGTCTTCTAAGTTCTGATCAGATTCTGTTTTCTAGTGATGAGGCCAATTCAACTGCTAAACCTTTAGTACAAAGCTATAATGATGATAGTACACTTTTCTTTGGAGATTTTGTGAAATCTATGATCAAGATGGGGAATATAAATCCAAAGACAGGGTCTGATGGAGAGATTAGGAAGAGCTGTAGAGTGATTAATTCTTAG 810 0.3914 MIDEAAAKFLQQGCDGSILLDGGADTEKFAFPNVNSVRGFDVIDTIKTSVESACSGVVSCADIVAIAARDSVLLSGSPSWNVLLGRRDGSVSNASLANVVLPSPFDPLATIVSKFNNVGLNLTDVVSLSGAHTVGRARCALFSNRLFNFSGTGSPDSTLDTSMLSDLQNLCPQTGDGNTTAVLDRNSSDAFDNHYYKNLLNGKGLLSSDQILFSSDEANSTAKPLVQSYNDDSTLFFGDFVKSMIKMGNINPKTGSDGEIRKSCRVINS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02872 269 CDD secretory_peroxidase 12 267 IPR033905 GO:0004601|GO:0042744
Vifa4g02872 269 PRINTS Haem peroxidase superfamily signature 124 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Haem peroxidase superfamily signature 58 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Haem peroxidase superfamily signature 76 88 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 242 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 182 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 198 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 38 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 76 91 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 123 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PRINTS Plant peroxidase signature 57 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 FunFam Peroxidase 102 247 - -
Vifa4g02872 269 Gene3D - 12 268 - -
Vifa4g02872 269 ProSiteProfiles Plant heme peroxidase family profile. 12 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 Gene3D Peroxidase, domain 2 102 247 - -
Vifa4g02872 269 ProSitePatterns Peroxidases proximal heme-ligand signature. 124 134 IPR019793 -
Vifa4g02872 269 Pfam Peroxidase 12 228 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 PANTHER PEROXIDASE 72-RELATED 12 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa4g02872 269 SUPERFAMILY Heme-dependent peroxidases 12 268 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02872 Vifa-Chr4 918852257 918854000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02872 13 268 Peroxidase AT5G19890 64.453 1.57e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02872 K00430 - gmx:100787073 428.713