Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02871 ATGAATTACCCTCACAAACTCAATAAATCTGTTCTCAAATCCCCCGATGCACCTCATCAATGGCCTTCCATTCTCGCCCTCATTCATTGGCTTGTTCAGTCTTGTCAAATTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAACCAACAACATCGTCTTCCAGTATTCTCTCGACGCTTATCTAAATTTCATTAGAGGTGACGATGAATCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGCTTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGGTGGAGAAGGAGAAACAGCCTGCAACTCTCTTTTCATCCTCTCAACGTCCCTGGCCAAATGTTATAACTTATACTATTTTGATTAAAGCAACTATTATTGAAGGTGGTATTGATAAGGCTATGAAGCTTTTGGATGAGATGTTGTCGAGAGGGCTTCGACCTGATGTGTCTACTTATAATGTTGTTGTTAAAGGTATGTGTAAAGAAGGGTTGTTGGATAGAGCTTTTGAGTATCTTAGTAGTATAAGTTGTAAGGGCTGTGTTGCTGATGTGAGTCCTTATAATATTCTGTTGAAGAATCTTTTGAAAGAAGGGAAATGGGAAGCTGGAGAGAGTTTGATGTCTGATTTGTTGGATAAAGGGTATGAAGAAGAGAGGAGGCAAGCAGATGTGAACTCACTGATGCTGATACTGGCATTGCTATGTCTTTTGCTTCCAATGCTATTTACATACAGTGCTGCATCACCGGAACTCACCGTAGAATCTTCACTCTACTTGTCAAGAGCTGCTAGCATTGTCATGTTGGCTGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAACTATTTGAAGCTGAAGATGAAGGCGGAGATGAGAACATTGAGGCAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACCGTGTTCACTGCGTTGTTGTCTGAATATGTGGTCGATACAATTGAGGCTGTTTGGAATCTCTTATTTCATGCCGTTCTTCTTCAAACCGAAAGAAACCCCTTGACACCGAAAGAAATCTCTTCAAACCGCTCATCTTCACACCAAAAAACGCACAGCAAGCAGTTTAACATCCTCTCCGTTCATCTCTTCAAACACAGTAAGTTTTATGTATCACTTTTTGCATTGTTCTCATCTCTCTCATTCTCTGCCATTGATTTCAGCATTGGAGATTCACTTGAATCTTATGGTTGA 1431 0.4207 MNYPHKLNKSVLKSPDAPHQWPSILALIHWLVQSCQIHLSFSSPSHTTTLQTNNIVFQYSLDAYLNFIRGDDESISELDHEIRTRILREKSNADNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMLQGDVIKFHKIIDEFGLRIESKERDLVEKEKQPATLFSSSQRPWPNVITYTILIKATIIEGGIDKAMKLLDEMLSRGLRPDVSTYNVVVKGMCKEGLLDRAFEYLSSISCKGCVADVSPYNILLKNLLKEGKWEAGESLMSDLLDKGYEEERRQADVNSLMLILALLCLLLPMLFTYSAASPELTVESSLYLSRAASIVMLAAYFVYLIFQLWTHRQLFEAEDEGGDENIEAEEAVIGFWSGFAWLAGMTVFTALLSEYVVDTIEAVWNLLFHAVLLQTERNPLTPKEISSNRSSSHQKTHSKQFNILSVHLFKHSKFYVSLFALFSSLSFSAIDFSIGDSLESYG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02871 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Vifa4g02871 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vifa4g02871 476 Pfam PPR repeat 250 277 IPR002885 -
Vifa4g02871 476 PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG 1 162 - -
Vifa4g02871 476 NCBIfam pentatricopeptide repeat 214 247 IPR002885 -
Vifa4g02871 476 NCBIfam pentatricopeptide repeat 250 278 IPR002885 -
Vifa4g02871 476 NCBIfam pentatricopeptide repeat 178 212 IPR002885 -
Vifa4g02871 476 Gene3D Ncd80 complex, Ncd80 subunit 1 39 IPR038273 -
Vifa4g02871 476 Coils Coil 83 117 - -
Vifa4g02871 476 Gene3D Tetratricopeptide repeat domain 161 290 IPR011990 GO:0005515
Vifa4g02871 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vifa4g02871 476 Pfam HEC/Ndc80p family 1 44 IPR005550 GO:0031262|GO:0051315
Vifa4g02871 476 Coils Coil 142 162 - -
Vifa4g02871 476 Gene3D - 47 160 - -
Vifa4g02871 476 Pfam PPR repeat family 175 224 IPR002885 -
Vifa4g02871 476 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02871 Vifa-Chr4 918848775 918850998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02871 281 400 Antiporters AT2G38170 54.688 4.49e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02871 - K11547 psat:127087560 176.407