Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02860 ATGGGTAAACAAGGACCTTGCTATCACTGTGGAGTTTCAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTCTACATGCTCGAACAGAACCTAATGATTATGAAGATCAAAGAAACCATGGTAATGCTTATGCTGCATCTGGATGGCTCACCCCTGAATATAATCAAGGATTTCAAAAGGCTGTGGATGAGGATACAAGTAATAGATCAAGTTCAGGGTCAGCTATCTCTAATTCTGAAAGCTGTGTTCAATTTGGTGGCATCGATGCTAGTGATTTGACAGGTGCTTCTCAATCAGTGGTATGGGATACCGCGGTGCCTTCCAAAAAGAGAACATGTGCTGGTCAGGAACTTCTTTATGAAAATGAAGCGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCATTAGGCATCCTAGCTCTATAGCTCGAGATGAAGAGTCAGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAATGAGGCATATTCGTGCTATGGTCCAATTCCCATGCTTAGTGATTACACTAGCAAGAATTTCTCTTCTCGGGGAGGTGCAAAGGTCGGAAACTCTGTTGACCAAAGAATGCCGCAAGAGAAACTTGAGAGGAATAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAAAGATGCAGTGAACTATGAGGAGTTTTCAAGAAACTTGACAGATGAAGAGCAGCAGCAATTACTGAAGTATTTCCCTGTGGTTGATACTGCAAAACTTCCTGATAGGGAAGGTGTGTTCGATAACTCTTTGTTGGGCGTGAACCCTGAAGACTGTAAGACGCTGAAAAGGCTTGCATTGTCTAATCTGTCAAAGTCAAAATGGAGTGGTGGAAACAAAGCTGGAAAATGTGATGATGTGGAATCTCCTGCTGTGGCATCAAGTAATGTTGCAAATGTTAAGAGATTGCGTGTCGGCCAAAACCAAAATTTTCCAGAATTGAAGACAACAATGAAGAGTCCCAAAAGGGTCATCATAAAAGCTAGCAGTGGCGGCAAAGAAATTGTAGACGGCTCCAGCATCAGTGGTGGCAAAGAAATTGTAGATGGCTCTAACATCTTTGTCGACGAGAGTTCTGATCATGATCTGCTGCTAGATTTTCCATCCAACAATTCTTTTCCACAGGCAGAGCTCTTACTCACAACTTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCGGTACACTCCCGTGTTACTCGTCCTTGA 1353 0.4294 MGKQGPCYHCGVSSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPNDYEDQRNHGNAYAASGWLTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGIDASDLTGASQSVVWDTAVPSKKRTCAGQELLYENEAPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGPIPMLSDYTSKNFSSRGGAKVGNSVDQRMPQEKLERNKSQLEKLEVLGNHDSSLCSIDLKDAVNYEEFSRNLTDEEQQQLLKYFPVVDTAKLPDREGVFDNSLLGVNPEDCKTLKRLALSNLSKSKWSGGNKAGKCDDVESPAVASSNVANVKRLRVGQNQNFPELKTTMKSPKRVIIKASSGGKEIVDGSSISGGKEIVDGSNIFVDESSDHDLLLDFPSNNSFPQAELLLTTSSLVAQGSTSSSSVHSRVTRP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02860 450 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vifa4g02860 450 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vifa4g02860 450 PANTHER OSJNBB0038F03.10 PROTEIN 141 443 IPR044589 -
Vifa4g02860 450 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02860 450 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02860 450 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vifa4g02860 450 Gene3D - 3 66 IPR013088 GO:0006355|GO:0008270
Vifa4g02860 450 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02860 Vifa-Chr4 911845361 911849201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02860 1 426 C2C2-Gata Transcription Factor Family AT4G17570 41.379 1.16e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g02860 GATA 1.3e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02860 - - psat:127074243 732.635