Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02859 ATGGGTAAACAAGGACCTTGCTATCACTGTGGAGTTTCAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTCTACATGCTCGAACAGAACCTAATGATTATGAAGATCAAAGAAACCATGGTAATGCTTATGCTGCATCTGGATGGCTCACCCCTGAATATAATCAAGGATTTCAAAAGGCTGTGGATGAGGATACAAGTAATAGATCAAGTTCAGGGTCAGCTATCTCTAATTCTGAAAGCTGTGTTCAATTTGGTGGCATCGATGCTAGTGATTTGACAGGTGCTTCTCAATCAGTGGTATGGGATACCGCGGTGCCTTCCAAAAAGAGAACATGTGCTGGTCAGGAACTTCTTTATGAAAATGAAGCGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCATTAGGCATCCTAGCTCTATAGCTCGAGATGAAGAGTCAGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAATGAGGCATATTCGTGCTATGGTCCAATTCCCATGCTTAGTGATTACACTAGCAAGAATTTCTCTTCTCGGGGAGGTGCAAAGGTCGGAAACTCTGTTGACCAAAGAATGCCGCAAGAGAAACTTGAGAGGAATAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAAAGATGCAGTGAACTATGAGGAGTTTTCAAGAAACTTGACAGATGAAGAGCAGCAGCAATTACTGAAGTATTTCCCTGTGGTTGATACTGCAAAACTTCCTGATAGGGAAGGTGTGTTCGATAACTCTTTGTTGGGCGTGAACCCTGAAGACTGTAAGACGCTGAAAAGGCTTGCATTGTCTAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATCATCTCAAGAGTGGTGGAAACAAAGCTGGAAAATGTGATGATGTGGAATCTCCTGCTGTGGCATCAAGTAATGTTGCAAATGTTAAGAGATTGCGTGTCGGCCAAAACCAAAATTTTCCAGAATTGAAGACAACAATGAAGAGTCCCAAAAGGGTCATCATAAAAGCTAGCAGTGGCGGCAAAGAAATTGTAGACGGCTCCAGCATCAGTGGTGGCAAAGAAATTGTAGATGGCTCTAACATCTTTGTCGACGAGAGTTCTGATCATGATCTGCTGCTAGATTTTCCATCCAACAATTCTTTTCCACAGGCAGAGCTCTTACTCACAACTTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCGGTACACTCCCGTGTTACTCGTCCTTGA 1377 0.4277 MGKQGPCYHCGVSSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPNDYEDQRNHGNAYAASGWLTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGIDASDLTGASQSVVWDTAVPSKKRTCAGQELLYENEAPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGPIPMLSDYTSKNFSSRGGAKVGNSVDQRMPQEKLERNKSQLEKLEVLGNHDSSLCSIDLKDAVNYEEFSRNLTDEEQQQLLKYFPVVDTAKLPDREGVFDNSLLGVNPEDCKTLKRLALSNLSKSKWVEHYNHLKSGGNKAGKCDDVESPAVASSNVANVKRLRVGQNQNFPELKTTMKSPKRVIIKASSGGKEIVDGSSISGGKEIVDGSNIFVDESSDHDLLLDFPSNNSFPQAELLLTTSSLVAQGSTSSSSVHSRVTRP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02859 458 PANTHER OSJNBB0038F03.10 PROTEIN 1 451 IPR044589 -
Vifa4g02859 458 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vifa4g02859 458 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vifa4g02859 458 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02859 458 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02859 458 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vifa4g02859 458 Gene3D - 3 66 IPR013088 GO:0006355|GO:0008270
Vifa4g02859 458 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Vifa4g02859 458 Pfam Asx homology domain 233 295 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02859 Vifa-Chr4 911845361 911849201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02859 1 434 C2C2-Gata Transcription Factor Family AT4G17570 42.366 1.19e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g02859 GATA 1.4e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02859 - - psat:127074243 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07655 1 1188991145 1188994883 Vifa4g02859 4 911845361 911849201 PCT