Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02858 ATGGGTAAACAAGGACCTTGCTATCACTGTGGAGTTTCAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTCTACATGCTCGAACAGAACCTAATGATTATGAAGATCAAAGAAACCATGGTAATGCTTATGCTGCATCTGGATGGCTCACCCCTGAATATAATCAAGGATTTCAAAAGGCTGTGGATGAGGATACAAGTAATAGATCAAGTTCAGGGTCAGCTATCTCTAATTCTGAAAGCTGTGTTCAATTTGGTGGCATCGATGCTAGTGATTTGACAGGTGCTTCTCAATCAGTGGTATGGGATACCGCGGTGCCTTCCAAAAAGAGAACATGTGCTGGTCAGGAACTTCTTTATGAAAATGAAGCGCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTCATTAGGCATCCTAGCTCTATAGCTCGAGATGAAGAGTCAGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAATGAGGCATATTCGTGCTATGGTCCAATTCCCATGCTTAGTGATTACACTAGCAAGAATTTCTCTTCTCGGGGAGGTGCAAAGGTCGGAAACTCTGTTGACCAAAGAATGCCGCAAGAGAAACTTGAGAGGAATAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAAAGATGCAGTGAACTATGAGGAGTTTTCAAGAAACTTGACAGATGAAGAGCAGCAGCAATTACTGAAGTATTTCCCTGTGGTTGATACTGCAAAACTTCCTGATAGGGAAGGTGTGTTCGATAACTCTTTGTTGGGCGTGAACCCTGAAGACTGTAAGACGCTGAAAAGGCTTGCATTGTCTAATCTGTCAAAGTCAAAATGGGTAGAACACTATAATCATCTCAAGAGTGGTGGAAACAAAGCTGGAAAATGTGATGATGTGGAATCTCCTGCTGTGGCATCAAGTAATGTTGCAAATGTTAAGAGATTGCGTGTCGGCCAAAACCAAAATTTTCCAGTTTCAGAATTGAAGACAACAATGAAGAGTCCCAAAAGGGTCATCATAAAAGCTAGCAGTGGCGGCAAAGAAATTGTAGACGGCTCCAGCATCAGTGGTGGCAAAGAAATTGTAGATGGCTCTAACATCTTTGTCGACGAGAGTTCTGATCATGATCTGCTGCTAGATTTTCCATCCAACAATTCTTTTCCACAGGCAGAGCTCTTACTCACAACTTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCGGTACACTCCCGTGTTACTCGTCCTTGA 1383 0.4273 MGKQGPCYHCGVSSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPNDYEDQRNHGNAYAASGWLTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGIDASDLTGASQSVVWDTAVPSKKRTCAGQELLYENEAPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGPIPMLSDYTSKNFSSRGGAKVGNSVDQRMPQEKLERNKSQLEKLEVLGNHDSSLCSIDLKDAVNYEEFSRNLTDEEQQQLLKYFPVVDTAKLPDREGVFDNSLLGVNPEDCKTLKRLALSNLSKSKWVEHYNHLKSGGNKAGKCDDVESPAVASSNVANVKRLRVGQNQNFPVSELKTTMKSPKRVIIKASSGGKEIVDGSSISGGKEIVDGSNIFVDESSDHDLLLDFPSNNSFPQAELLLTTSSLVAQGSTSSSSVHSRVTRP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02858 460 Gene3D - 3 66 IPR013088 GO:0006355|GO:0008270
Vifa4g02858 460 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Vifa4g02858 460 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vifa4g02858 460 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Vifa4g02858 460 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02858 460 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Vifa4g02858 460 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vifa4g02858 460 Pfam Asx homology domain 233 294 IPR028020 -
Vifa4g02858 460 PANTHER OSJNBB0038F03.10 PROTEIN 1 453 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02858 Vifa-Chr4 911845361 911849201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02858 1 436 C2C2-Gata Transcription Factor Family AT4G17570 42.395 8.30e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g02858 GATA 1.4e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02858 - - psat:127074243 748.814