Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02856 ATGAAAATAACACACTTGCACACAAGCATCCTTAGGGTTTCTCCACTTGAATACAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATTGTATACCAAATCAATGAAAATACCATAAACCCTGGCTACTTCGCCATCAATATTCTTTATGTTGGAGGAACATATGACGTCACTGTTGTTCAGATATGGAAGAAAGAACAACACATATGGGAGGCCATGCGTAGATCTTATGGCGCTGTATTTGACTTTGCTAACCCACCCGAAGGTGAAATCCGATTGAAATTTCAAGTGAGTAGCAATGTTGGGTCCAACTGGGTGGTGTCACAGTTCACAATACCCGCGGGTTGGAAGGCTGGTGCTACTTATTCCACCAAAATTCACCCTTATTAA 390 0.4103 MKITHLHTSILRVSPLEYKRVPCTFKGNNIVYQINENTINPGYFAINILYVGGTYDVTVVQIWKKEQHIWEAMRRSYGAVFDFANPPEGEIRLKFQVSSNVGSNWVVSQFTIPAGWKAGATYSTKIHPY 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02856 129 Pfam Expansin C-terminal domain 32 113 IPR007117 -
Vifa4g02856 129 SUPERFAMILY PHL pollen allergen 30 123 IPR036749 -
Vifa4g02856 129 PANTHER EXPANSIN-B3 15 126 - -
Vifa4g02856 129 Gene3D - 22 125 IPR036749 -
Vifa4g02856 129 PRINTS Expansin/Lol pI family signature 11 27 IPR007118 GO:0005576
Vifa4g02856 129 PRINTS Expansin/Lol pI family signature 110 124 IPR007118 GO:0005576
Vifa4g02856 129 PRINTS Expansin/Lol pI family signature 70 84 IPR007118 GO:0005576
Vifa4g02856 129 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 42 124 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02856 Vifa-Chr4 910758715 910759226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02856 16 126 Expansin Gene Family AT4G17030 47.748 5.44e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02856 - - psat:127074244 213.772