Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02849 ATGGTGAGGTGCAAAATACCAAAATATTGTGATGATAATGGAGCATATGTGGTGGTAACGGACTATGGTGAGGGAGATAGGACTGACTTCATATTGAGTCCACGTGCCTTTTCAAAATTGGGGCGCAATGCACTTACATCCCAAAAATTAAAGAAATACGGAGTATTGGATGTTGAATACAAAAGGGTTCCTTGTACATTTAAAGGCAACAATATTGTATACCAAATCAATGAAAATACCATAAACCCTGGCTACTTCGCCATCAATATTCTTTATGTTGGAGGAACATATGACGTCACTGCTGTTCAGATATGGAAGAAAGAACAACACATATGGGAGGCCATGCGTAGATCTTATGGTGCTGTATTTGACTTTGCTAACCCACCCGAAGGTGAAATCCGATTGAAATTTCAAGTCAGTAGCAATGTTGGGTCCAACTGGGTGGTGTCACAGTTCACAATACCCGCGGGTTGGAAGGCTGGTGCTACTTATTCCACCAAAATTCACCCTTATTAA 516 0.4089 MVRCKIPKYCDDNGAYVVVTDYGEGDRTDFILSPRAFSKLGRNALTSQKLKKYGVLDVEYKRVPCTFKGNNIVYQINENTINPGYFAINILYVGGTYDVTAVQIWKKEQHIWEAMRRSYGAVFDFANPPEGEIRLKFQVSSNVGSNWVVSQFTIPAGWKAGATYSTKIHPY 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02849 171 Gene3D - 66 167 IPR036749 -
Vifa4g02849 171 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 84 166 IPR007117 -
Vifa4g02849 171 Gene3D - 1 65 IPR036908 -
Vifa4g02849 171 SUPERFAMILY PHL pollen allergen 72 165 IPR036749 -
Vifa4g02849 171 PANTHER EXPANSIN-B3 2 168 - -
Vifa4g02849 171 Pfam Expansin C-terminal domain 74 155 IPR007117 -
Vifa4g02849 171 PRINTS Expansin/Lol pI family signature 53 69 IPR007118 GO:0005576
Vifa4g02849 171 PRINTS Expansin/Lol pI family signature 152 166 IPR007118 GO:0005576
Vifa4g02849 171 PRINTS Expansin/Lol pI family signature 112 126 IPR007118 GO:0005576
Vifa4g02849 171 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 70 IPR007112 -
Vifa4g02849 171 SUPERFAMILY Barwin-like endoglucanases 2 70 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02849 Vifa-Chr4 910350417 910354297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02849 2 168 Expansin Gene Family AT4G17030 50.898 1.07e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02849 - - psat:127074244 325.479