Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02848 ATGGAACTCTCTTTTAACCACCAACTTGGCTTTGTTTGTGTCATACTACTCTTACTTCAGCTTTGTTTCTCACAACACTCTTTTACTGACTCCAGAGCAACATATTACGGTAGCCCAGATTGCTACGGGACTCCAAGGGGTGCTTGTGGCTTTGGAGAATACGGAAGGACAGTGAATGATGGCAGTGTCGCAGGTGTGTCTAAGCTATGGAAGAATGGTAGTGGCTGTGGTGCATGCTATCAGGTGAGGTGTAAAATACCTCAATACTGCGATGAAAATGGAGCAAACGTTGTGGTAACAGACTACGGCGAAGGAGATAGAACAGACTTCATAATGAGTCCACGCGGCTACTCAAGATTGGGGCGCAACGAAGACGCATCTGCTGAGCTTTTCAAATACGGTGTTGTAGATATTGAATACAAAAGAGTTCCATGCATGTACGATGGCTATAACATAGTGACTCAAGTCCATGAACAAAGCAGAAACCCTGATTACTTTGCTGTTGTGGTTCTATACGTAGATGGAATGTTTGATATCAATGCTGTTGAGATTTGGCAGGAAGATTGCCAAGAATGGAGGCCAATGAGGAGAGCCTATGGAGTAGTGTTTGACTCAGCTAATCCTCCAAGTGGTGAAATATACTTGAGGTTTCAAGTGAGTGGAAATGATGGTGTTTATTGGGTGCAGTCCAAGAATGCTATTCCTAGTGATTGGAAAGCTGGTGCTGCATATGACACCATGGTTCAGCTTAATCAGAATTAG 762 0.437 MELSFNHQLGFVCVILLLLQLCFSQHSFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSKLWKNGSGCGACYQVRCKIPQYCDENGANVVVTDYGEGDRTDFIMSPRGYSRLGRNEDASAELFKYGVVDIEYKRVPCMYDGYNIVTQVHEQSRNPDYFAVVVLYVDGMFDINAVEIWQEDCQEWRPMRRAYGVVFDSANPPSGEIYLRFQVSGNDGVYWVQSKNAIPSDWKAGAAYDTMVQLNQN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02848 253 CDD DPBB_EXLB_N 29 145 - -
Vifa4g02848 253 Gene3D - 19 144 IPR036908 -
Vifa4g02848 253 SUPERFAMILY PHL pollen allergen 155 245 IPR036749 -
Vifa4g02848 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Vifa4g02848 253 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Vifa4g02848 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Vifa4g02848 253 Pfam Expansin C-terminal domain 154 235 IPR007117 -
Vifa4g02848 253 PANTHER EXPANSIN-B3 16 249 - -
Vifa4g02848 253 Gene3D - 145 247 IPR036749 -
Vifa4g02848 253 Pfam Lytic transglycolase 63 140 IPR009009 -
Vifa4g02848 253 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vifa4g02848 253 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Vifa4g02848 253 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vifa4g02848 253 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vifa4g02848 253 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02848 Vifa-Chr4 910298559 910299492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02848 1 251 Expansin Gene Family AT4G17030 57.937 9.89e-107 307