Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02834 ATGGAAGAAAGATATGAGCCATTAAAGGAACTTGGTTCTGGAAATTTTGCTGTTGCTAGGTTGGCTAAAGACAAAAACACTGGTGAACTTGTTGCTCTCAAATACATTGAAAGGGGCAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACAGATCATTAAGGCATCCTAATATTATCAGATTCAAAGAGGTCTTGCTGACACCTTCTCATTTAGCCATTGTCTTGGAATATGCTGCTGGGGGTGAACTCTTTGAGAGGATATGCACTGCTGGCCGGTTTAGTGAAGACGAGGCAAGATATTTCTTCCAACAGCTAATATCTGGTGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACGCTCTTGGATGGAAATCCATCCCCTCGGCTTAAAATTTGCGACTTCGGTTACTCCAAGTCTGCACTATTGCACTCTATACCAAAGTCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTACGACGGAAAGACTGCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGCTAGTTGGTGCATATCCATTCGAAGAACCAGAAGATCCTAGAAATTTTAGAAAGACTATTGGGAGAATAATAGGTGTTCAATACTCCATACCCGACTATGTACGCGTTTCTGCAGAGTGTAGGAATCTTCTATCTCGCATCTTTGTTGCCGATCCTGCTAAGAGGATCAGTCTCCAAGAGATAAAGCATAACCCTTGGTTCCTAAAGAATTTGCCTAAAGAGATCATTGAGGCTGAAAGAAAAGGTTATGTGGAAACAAAGAAGGATCAACCAAGCCAAAGTGTGGAAGAAATCATGAGGATCATACAAGAGGCAAGTGTACCGGGACCAGGATCGAAAGTTGGCGATGGAGGTCAAGCTGGTCCGGGTTCAATGAACATGGAAGATGACGAGGAAATCGATGTCGATGTCAGTGGTGAGTATGAGTATGAAAATGCATGA 1023 0.4223 MEERYEPLKELGSGNFAVARLAKDKNTGELVALKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPSHLAIVLEYAAGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSIPKSTVGTPAYIAPEVLSRKEYDGKTADVWSCGVTLYVMLVGAYPFEEPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNLLSRIFVADPAKRISLQEIKHNPWFLKNLPKEIIEAERKGYVETKKDQPSQSVEEIMRIIQEASVPGPGSKVGDGGQAGPGSMNMEDDEEIDVDVSGEYEYENA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02834 340 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Vifa4g02834 340 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Vifa4g02834 340 MobiDBLite consensus disorder prediction 321 340 - -
Vifa4g02834 340 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Vifa4g02834 340 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Vifa4g02834 340 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02834 340 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
Vifa4g02834 340 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02834 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vifa4g02834 340 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02834 340 PANTHER SERINE/THREONINE KINASE 3 287 - -
Vifa4g02834 340 CDD STKc_SnRK2 4 260 - -
Vifa4g02834 340 MobiDBLite consensus disorder prediction 298 340 - -
Vifa4g02834 340 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02834 Vifa-Chr4 906663736 906666025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02834 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 44.245 4.29e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa4g02834 Pkinase 8.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02834 K14498 - gmx:100782714 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07646 1 1187362928 1187364762 Vifa4g02834 4 906663736 906666025 PCT