Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02822 ATGAAGTGTTTCTTCTTCAAAGAGAAATCCAAATCTGCTCCTGAATTGCAGAACCAAGGCAAAAAGAAGAAGAACCCGGCGTCGAATCGCGCAGCAAACTCTACCGGTTCTGTGTCTTCGTCAAAGAGTGTGAAGGATTTGTACAAAGAGAAAGAGCATAGTTTTAGAGTTTTTACTCTTCAAGAACTTAGAGAAGCTACCAATGGTTTTAACAGGATGTTCAAGATTGGAGAAGGGGGTTTTGGAAGTGTTTATAAAGGATCGATTTTGCCTCCCAATGGACAAGGTGATCCAGTTCAAGTTGCCATCAAAAGGCTTAACACGCGTGGATTTCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAGTTTCTCAGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATATTGCTCTGTAGATGGAGAAAGAGGAATCCAACGGCTGTTGGTGTACGAGTACATGCCAAACAGGAGTTTGGAGAACCATCTTTTCAGTAAAACTTTACCGGTTCTTCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACATGAAGGATTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCAAATGTTCTATTGGACGAGGATTTCGACCCAAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAAACTCATGTATCTACTGCGGTAGTAGGGACACAAGGATATGCTGCGCCAGAGTATATCGAAACAGGTCATCTCAAAGTCCAGAGTGACATGTGGAGTTTCGGAGTAGTACTCTACGAGATCCTCACAGGAAGAAGATCATTGGAAAGGAACCGTCCCACAGCTGAACAAAAGCTATTAGACTGGGTAAAACAGTATCCTGCTGACAGTAACAGATTCAACATGATAATGGATCCACGTCTTAGGAACCAATATCCAAACGTTGCAGCACGTAAAATAGCGAAGTTGGCCGATAGTTGCTTGAAGAAGAATCCAGAAGACAGACCTTCTATGAGTCAGATAGTGGAAGGGTTGAAAGAAGCATTGCAGTTTTCAGAAATTTCAAATACTCCTCATGATAATGCCGAATCTTCTCGGTCAAAATTGGTTCGGAAAGGTCAATAG 1143 0.4243 MKCFFFKEKSKSAPELQNQGKKKKNPASNRAANSTGSVSSSKSVKDLYKEKEHSFRVFTLQELREATNGFNRMFKIGEGGFGSVYKGSILPPNGQGDPVQVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEYMPNRSLENHLFSKTLPVLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDEDFDPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFNMIMDPRLRNQYPNVAARKIAKLADSCLKKNPEDRPSMSQIVEGLKEALQFSEISNTPHDNAESSRSKLVRKGQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02822 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 365 - -
Vifa4g02822 380 Gene3D Transferase(Phosphotransferase) domain 1 156 375 - -
Vifa4g02822 380 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g02822 380 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Vifa4g02822 380 PANTHER OS01G0588500 PROTEIN-RELATED 32 353 - -
Vifa4g02822 380 Pfam Protein tyrosine and serine/threonine kinase 75 350 IPR001245 GO:0004672|GO:0006468
Vifa4g02822 380 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02822 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vifa4g02822 380 MobiDBLite consensus disorder prediction 19 43 - -
Vifa4g02822 380 CDD STKc_IRAK 76 353 - -
Vifa4g02822 380 MobiDBLite consensus disorder prediction 360 380 - -
Vifa4g02822 380 SUPERFAMILY Protein kinase-like (PK-like) 52 349 IPR011009 -
Vifa4g02822 380 MobiDBLite consensus disorder prediction 1 45 - -
Vifa4g02822 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02822 Vifa-Chr4 903466241 903468903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02822 3 351 Glycoside Hydrolase AT3G07070 43.296 1.32e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g02822 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02822 - - gmx:100305403 642.499