Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02820 ATGGCTGGAATTTTGAAACAACCAGGTCCATTCGCAATAACTCCACACAAAGTATTCCTCTGCATACTCTTCAAGAATCTACGCTCCTCCAACTCTTCTCCTAACACCATTACCGGATTTTCCTCCTTGAAGAGCGGTGACCAGGAAGCTCTCACGAAGTTATTTGCAGGAAAGGACAAGTCTGAAAAGGCTGGTGAAGCAACGGAAGACATACAAAACGAAAAGCAAGATACCGAAGAAAGTGGTTCAAAGAAAAGAAAATTATCCATGTCTGAGGTTAATATTACCTTTTCCGTTTCTGATGTCAAGAGTACATACAAGGATGCTACCCTTTTGCCCAAATGGAAGGCATTCCAGACCGTCATTTTTCTTGAAGGGGATGATGGTCCTAATGCTTGGTCCCTCATGTATCCCTTAATTCCTGATAAGCTGCAAACCTTATACAACGATGGCTACAAACTGGTAATTTTCACCAATGAATCCAATATTGATCGCTGGAAGAATCAAAGACAAAAAGCCGTGGACTCAAAAATTGGACGGCTAAATCAGTTTATTGAGAAAGTGAAGGTCCCAATTCAGGCTTTTATAACTCGTGGGATAGGTGGTAAATCAGGCAAGGCTGGAACAAAGGAAGCTGATCCTTTTCGGAAACCAAAACCTCAATGGGGCGCTGCTGTTGGTATCCAGGTTCCTATTGATGCTATGTTCCAGAAGGACGAAATGATTGACCTCATTGGAGTGACAAAGAGCAATAGGGTTTTCTACAACCCAATTCTGTGA 780 0.4231 MAGILKQPGPFAITPHKVFLCILFKNLRSSNSSPNTITGFSSLKSGDQEALTKLFAGKDKSEKAGEATEDIQNEKQDTEESGSKKRKLSMSEVNITFSVSDVKSTYKDATLLPKWKAFQTVIFLEGDDGPNAWSLMYPLIPDKLQTLYNDGYKLVIFTNESNIDRWKNQRQKAVDSKIGRLNQFIEKVKVPIQAFITRGIGGKSGKAGTKEADPFRKPKPQWGAAVGIQVPIDAMFQKDEMIDLIGVTKSNRVFYNPIL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02820 259 Gene3D - 119 245 IPR023214 -
Vifa4g02820 259 NCBIfam HAD-IIIA family hydrolase 130 222 IPR006549 -
Vifa4g02820 259 SUPERFAMILY HAD-like 131 221 IPR036412 -
Vifa4g02820 259 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 31 130 - -
Vifa4g02820 259 Pfam Polynucleotide kinase 3 phosphatase 128 220 IPR013954 -
Vifa4g02820 259 MobiDBLite consensus disorder prediction 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02820 Vifa-Chr4 901107609 901108462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02820 229 249 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.714 8.93e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02820 K08073 - gmx:100796730 257.684