Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02816 ATGGCTGTTCAAGCTCAATATCCTTCCAATGTTCTTCTTCTCAACAACAACAATAACAACAGTAGAAATGTTCAAGAAGAACATGAATACTCTTTACAACCGCAACCACCGGGAGCATTAGGACTAGCACTTCTTGATCAAACTCATCATCATCAAAATCATCATCAACAACATATTCTATGCAACAACACAAGTACTAATTCTTGTCGGAAAAGAGGAAGAGAACCAACCAGAACATCACCTAATCTTATCAATCATTTCTCTTTACAATCTCAACCGTCACAGGTTATTCATCTTTCTCAACTCCATAATCATCAACAACAACAAAATGTTGTCTCTACTGGCCTTCGTTTATCATTCGATGATCAACAACAACAACAAAGATTACAGCTACAACTTCATCAATATCAATCTCAACTACAACAAGGTTGTCACTCCTCAACTTTCTTGTCTCTATTATCACAAGGACTTGTTTCTCAAATCAAACAACAACATAATGAATTAGACCAATTCATTCAAGCCCAGGGAGAGACTCTACGGCGGACATTGACGGAAAAAAGACAGAGACATTACCGAGAGCTACTAACCACGGCGGAGGAAGCGGTGGCGCAACGCCTAAGAGAGAAAGAAGCCGAGCTAACAAAAGCGACGCGCAAGAACGCCGAGTTAGAAGCGCGTGCGGCCCAGCTAACCATGGAAGCCCAAGCGTGGCAGGCGAAAGCCCGGGCTCAGGAAGCCGCGGCAGCCTCTCTCCAAGCCCAGCTGCAACAGACAATAATGTGTCAAACCGGCGAAGACGCCGGCATCTCCTGTGCCGTGGAAGGACAGGCTTCGGATGCCGAATCGGCATACGTGGATCCGGACAGAGTGGTTGTTGTTGCGGAGGCGCGTGGGAAATGTAGAGCGTGTTTAAAGCGCGTGGCGACGGTGGTTGTTTTGCCTTGTCGGCATTTGTGCATATGTAAAGAATGCGATGCGCATTATAGTGCTTGCCCTGTTTGCCTCACACTCAAGAATTCAACCGTTGAGGTCTTTCTCTCTTAG 1044 0.4579 MAVQAQYPSNVLLLNNNNNNSRNVQEEHEYSLQPQPPGALGLALLDQTHHHQNHHQQHILCNNTSTNSCRKRGREPTRTSPNLINHFSLQSQPSQVIHLSQLHNHQQQQNVVSTGLRLSFDDQQQQQRLQLQLHQYQSQLQQGCHSSTFLSLLSQGLVSQIKQQHNELDQFIQAQGETLRRTLTEKRQRHYRELLTTAEEAVAQRLREKEAELTKATRKNAELEARAAQLTMEAQAWQAKARAQEAAAASLQAQLQQTIMCQTGEDAGISCAVEGQASDAESAYVDPDRVVVVAEARGKCRACLKRVATVVVLPCRHLCICKECDAHYSACPVCLTLKNSTVEVFLS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02816 347 MobiDBLite consensus disorder prediction 49 80 - -
Vifa4g02816 347 PIRSF SBP1_RNase_bind 1 347 IPR017066 -
Vifa4g02816 347 Coils Coil 199 254 - -
Vifa4g02816 347 Pfam Zinc finger, C3HC4 type (RING finger) 298 335 - -
Vifa4g02816 347 ProSiteProfiles Zinc finger RING-type profile. 300 334 IPR001841 -
Vifa4g02816 347 CDD mRING-HC-C3HC5_CGRF1-like 298 334 - -
Vifa4g02816 347 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 51 344 IPR017066 -
Vifa4g02816 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 347 IPR013083 -
Vifa4g02816 347 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 279 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02816 Vifa-Chr4 898134913 898136235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02816 300 336 Miscellaneous Gene Families AT2G21380 43.243 1.64e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02816 K19042 - gmx:100788924 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02816 4 898134913 898136235 Vifa4g02816 4 898134913 898136235 ECH
Vifa1g07629 1 1184342621 1184343786 Vifa4g02816 4 898134913 898136235 PCT