Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02802 ATGGTTTGTACTGCTAATGATTTACAAGAATGGAAGGATTTTCCTAAAGGACTCAAGGTTCTTCTCCTTCAGGAAGACAGTACGTTTGCTGCTGAGATAAGAACAAAGCTTGAGGCCATGGACTATATTGTTTCGTCATTCTGCGACGTGAATGAAGCCTTGTCAGCAATCTCAAATAGACCTGAAGGCTTCCATATAGCCATAGTGGAGGTGAGTTCGCACAGTTGCGAGGGAGGTTTCAAATTTCTGGAGAATAAAAAGGACTTGCCAACCATTATGACTTCAAGCAACGATTGTCTGAACACCGTGATGAAGTGCATAGCACTTGGGGCAGTGGAGTTCCTCAGCAAACCGCTCTCAGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCGTTCAATGCTGGGGCAAATGTCCTGTCGGAATCCCTGAAACCTGTCAAGGAATCTGTAGTCTCCATCTTGCAGCTTCAAACAAACAACGGACAACACGACAGTAGAGCTTTGGTTGAGTTAGAAAACGTATCTCGATTTTCTGACAACGAGCATTATCCAGCTCCTTCAACCCCACAATTGAAACAGGTGGAAAGATTACTAGACGACGGGGATTGCCAGGAGCAGACTAATTGCTCCACAGAAAAACAAAAAAGTGGAGAGCATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGAAAATTTGAATGCTGAAAACACTCCTCAACAAAGGAAATCTGAAATCACTTTGGTTCAAAAGGAAGAGGAGGATTTTATGGACACTTCTAAGTGTGAGAGTGTGGTATCTCCACATCCGCAAAATGTGAAGGTTCTCACCAATAGTGAAAGTAATACTACATCTAAAAAAAAAATGGCCGTCCGTAATCATAAATGTGAATTAAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACACCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCACGCTATTCCTTCTCGTATATTGGATTTAATGAAAGTGGAGAGCTTAACGAGACATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGCGACATATCTTGCCAAAGCAAGAAGACCGGAAATGGCTATATCAACGAGATCTAATGCAAAGGGGTTATTGTTTTCAAAGGCCAATTATGCCTTGTCCTCCGTCATATTATTCTAACCGTACCCTTCCTCTAGCTCCTTTATATCCTATGTGGGGACAATCTGGAAGTCAAATGGCCGGCATGCCTATTTGGGGCACTTCCAGTTATCCCTTTTGGCAGCGTACAGAAAGTTGGCACTGGCAACCATTTCCAGGGATGCATTCAGATACATGGGGCCGCCCTGTGTTACCACCACCTCAAGCTCAATGCTTTTCCTACACTCAAAAAAATATACCTTTAAGGAATGATAATGCTATGGATTACACGTTTGGCACGCCCTACAGTTCCTTAGACGATTATCCGGAAGAGGAGATTATTGACAAGGTTGTGACGGAGGCAATGAGTAAACCATGGCTACCTTTGCCGATAGGCCTCAAACCGCCTTCCATGGATAGTGTGTTGACTGAGCTTTCAAGGCAAGGCATTTCCAGCATCCCTCCAAGAAATAATAGTTGTATTCCCATTTGA 1656 0.43 MVCTANDLQEWKDFPKGLKVLLLQEDSTFAAEIRTKLEAMDYIVSSFCDVNEALSAISNRPEGFHIAIVEVSSHSCEGGFKFLENKKDLPTIMTSSNDCLNTVMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGANVLSESLKPVKESVVSILQLQTNNGQHDSRALVELENVSRFSDNEHYPAPSTPQLKQVERLLDDGDCQEQTNCSTEKQKSGEHDGESKSVETTCENLNAENTPQQRKSEITLVQKEEEDFMDTSKCESVVSPHPQNVKVLTNSESNTTSKKKMAVRNHKCELKANRKKMKVDWTPELHKKFVKAVEQLGIDHAIPSRILDLMKVESLTRHNVASHLQKYRMHKRHILPKQEDRKWLYQRDLMQRGYCFQRPIMPCPPSYYSNRTLPLAPLYPMWGQSGSQMAGMPIWGTSSYPFWQRTESWHWQPFPGMHSDTWGRPVLPPPQAQCFSYTQKNIPLRNDNAMDYTFGTPYSSLDDYPEEEIIDKVVTEAMSKPWLPLPIGLKPPSMDSVLTELSRQGISSIPPRNNSCIPI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02802 551 Gene3D - 304 366 - -
Vifa4g02802 551 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vifa4g02802 551 FunFam Two-component response regulator 304 367 - -
Vifa4g02802 551 MobiDBLite consensus disorder prediction 208 231 - -
Vifa4g02802 551 FunFam Two-component response regulator-like APRR2 17 143 - -
Vifa4g02802 551 SUPERFAMILY CheY-like 16 134 IPR011006 -
Vifa4g02802 551 Pfam Myb-like DNA-binding domain 311 360 IPR001005 -
Vifa4g02802 551 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Vifa4g02802 551 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Vifa4g02802 551 MobiDBLite consensus disorder prediction 216 230 - -
Vifa4g02802 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 308 363 IPR006447 GO:0003677
Vifa4g02802 551 SMART REC_2 18 128 IPR001789 GO:0000160
Vifa4g02802 551 Gene3D - 18 142 - -
Vifa4g02802 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Vifa4g02802 551 SUPERFAMILY Homeodomain-like 307 365 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02802 Vifa-Chr4 888856331 888859585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02802 1 549 Response Regulator Gene Family AT4G18020 47.314 1.52e-134 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa4g02802 Response_reg 2.4e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02802 - - gmx:100777535 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07573 1 1175893038 1175896798 Vifa4g02802 4 888856331 888859585 PCT