Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02794 ATGGGTTGCTTTCACTCAAAAACCGCTCATCTTCACTCCCCTGAAGACCCTCCTACTGATTTACCAGACTCAAAGAAACCCGATCCAGGTGATGATGGAGGTGATGGTGATCAAGAAAGTCAGGTTCCAGCATTCAAAGAGTATGGTCTGAATGAACTCAGAAGGGCTACACATGAGTTCAGCACTGGTTACATTGTCTCTGAGAGTGGTGAGAAAGCTCCTAATTTGGTTTACAGAGGGAAGCTTGAGAATAATCGATTAGTTGCTGTTAAACGCTTCTCCAAACAGTCTTGGCCTGATGCTCAACAATTTCTGGCAGAGGCAGCCGGAGTTGGGAAAGTGAGGCACAAAAGACTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAACATCTTTTTCATTGGGACAAGCAACCATTACCGTGGGAAATGCGTCTTAGAGTCGCGTATCATGTTGCCCAGGCACTAGATCATTGTAGCATGGAAAACCGGAAAATATATCACGATCTGAATGCTTATAGGATTCTTTTTGATGAGGATGGTGATCCCCGTTTATCAAGTTTCGGGCTGATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATCTGGCCTATACTCCACCTGAGTTTTTGCGAACAGGTAGGATAATAGCAGAAAGTGTGATCTACAGTTACGGTACTGTCCTACTGGATCTTTTGAGCGGCAAGCATATTCCCCCAAGCCATGCTTTGGACTTAATTAGAGGGAAAAATGCATTGTTGTTGATGGACTCATCCTTAGAAGGGCAATATGCGAATGATGATGCTACGAAGTTGGTTGAGCTCGCATCAAAATGTCTTCAGTTTGAGGCCAGAGAAAGGCCTGATACTAAGTTTCTTCTCACTGCAGTTACACCTCTTCAAAAGCAGAAAGAGGTAGCGTCTCATGTGTTAATGGGCCTTACTAAAACAGCGGCAGTGCTACCGTTACCAACCATGCTTTCTCCTCTTGGAAAGGCTTGTGCTAGGATGGATCTTACTGCTATTCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAACGAGCTTTCATTTCAAGAGTGGACACAACAAGTGCAAGACATCTTAAACACGAAAAAGTTCGGTGATATTGCATTTAGAGACAAGGATTTCAAAAATGCAATTGAGTATTATTCCAAGTTAGTGGTTATGATGTCTGTTCCTTCCGCGACAGTCTTTGCAAGGAGAGCCTTCTCCTACTTGATGAATGAGCAGGCAGAACTTGCATTAAGAGACGCAATGCAGGCGCAGGTATGCATACCTGATTGGCCAACTGCATTCTACCTACAAGCTCTTGCTCTCTCAAAGCTGGGAATGGAAACCGACGCACAGGACATGCTCAACGACGGAGCAGCCTTTGAAGCAAAGAGATCTAATAGCTGGCGCAATTAA 1497 0.4362 MGCFHSKTAHLHSPEDPPTDLPDSKKPDPGDDGGDGDQESQVPAFKEYGLNELRRATHEFSTGYIVSESGEKAPNLVYRGKLENNRLVAVKRFSKQSWPDAQQFLAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRLRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIAESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNALLLMDSSLEGQYANDDATKLVELASKCLQFEARERPDTKFLLTAVTPLQKQKEVASHVLMGLTKTAAVLPLPTMLSPLGKACARMDLTAIHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNEQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRSNSWRN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02794 498 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Vifa4g02794 498 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Vifa4g02794 498 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Vifa4g02794 498 FunFam probable serine/threonine-protein kinase At4g35230 35 138 - -
Vifa4g02794 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 33 493 IPR045845 GO:0004672|GO:0009742
Vifa4g02794 498 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02794 498 FunFam probable serine/threonine-protein kinase At4g35230 388 497 - -
Vifa4g02794 498 Gene3D Tetratricopeptide repeat domain 388 497 IPR011990 GO:0005515
Vifa4g02794 498 MobiDBLite consensus disorder prediction 1 41 - -
Vifa4g02794 498 Pfam Protein tyrosine and serine/threonine kinase 77 310 IPR001245 GO:0004672|GO:0006468
Vifa4g02794 498 SUPERFAMILY TPR-like 389 490 IPR011990 GO:0005515
Vifa4g02794 498 SUPERFAMILY Protein kinase-like (PK-like) 44 314 IPR011009 -
Vifa4g02794 498 MobiDBLite consensus disorder prediction 9 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02794 Vifa-Chr4 884101719 884104788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02794 14 314 Glycoside Hydrolase AT3G07070 33.538 1.18e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa4g02794 PK_Tyr_Ser-Thr 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02794 K14500 - gmx:100793576 917.916