Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02785 ATGGAACCCAAACTTCCCAGTGAAGAAATTTTACAAAAGTTGGTATATGCTTACCTATGGGAGAAAGGATATGAAAGGACTGCTGAGGTATTCCGAAATGATACTCAACTTACTGAACCACCTCATGGTATGCTTCTCTTCACCTTTATACTTGCATTTGCAACCTATGTTCCATTCATCTTCTTTTCTTTGTCACTGACTCATTATTTTCTTATTTTATTTAATCAAGAACCTTCTAGATTATTGTTAGACATCTGGAATCATTTCTATGAGCGGTTTAACCCTAGAGATAGGCATCACATGGGACAAACTTCTCGCCAGAATCTGCAGCAGCCCGGTAATAGTTCCAGTCAGAGTCAGGTTATACTGCAGCAGCGAAGTAATACTTCCACGCAGAGTCAGGTTATAGTGCAGCAGCCCAGCAATAGCTCCACGCAGAGTCAGGATTTATTGCAACCGCTAGACATTGGTCCTCTAATGAACAATGCTACTGCTCAAAAAATTTGGGATGAAACTCCATTTCAACACCATTCAAGTTTTGGAAGCGGTGCCAAACTTATGTCCTGCGATGTTTCATCAGATGGAAACATTGTAGCAAGTGGAGGGCATGGCGCATACGGGAAGAAGCCTGAGAAAGTGTTGCGCTATACGGTACATGATGCACATAGACATAGAGAGACTGTAAGATCGTTGGACTTGGAAAGAGAGATTGAAATTCCAAAGAGGTTTAATCTTTCACCTTCCATGGAGGACTTGTTGAAGAGAAATGTTACAATGTTTGCTGCTGGTTTTAGAGCAATTACCAAACTGCAGTTGCAGGCAAAGGCCAACCTTTCTGGCCGTAGTGTTATGTCTAATTTGGATTCTCCGGTTGTATCTGGGGCCGATGTTGCGGTTCATCAGTGTGGACATTCTCGGTTTTCTGATAACCAAGATGCTGTGAACTCAGTGCTGAGTAAATTTCGTGACTTGAATCTTGATAAGAATTTTGAGTTTGGGGCAGAGGATCAGAAAGATGAGGTGATACAAAGTATGTTTCATCAGATAAAAGATTTGGAGAAACAGGCCAAAGCACGAAAAGAATGGGCTCAGCGGACAGCACTGAACGCAGCAAAGAAGCTAAGCGATAATATGACTGAACTCACAACGTTACGGACGGATAGAGAGGATACCCAAAAATTGCAGGCACTTGAGGATACAACCATGAAGGAAATGCTCTCGGAGATGGAGAAGGGTTTGAGAGCGGCTAGTGGTCAAGTGGACCGCGCAGTTGAAGCTGTGAAAAGATTAGAGACTGAAAATGCAGAAATTAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGACACAGCTTGCTTAGAAGTTGCGAAAAAGGAGAAAAAAATCTTAAAGAAACTTCAAGCTGGGGAAAAACAGAAGGCTGAGCTACAGAAGGAAGTTTCAGATTTGAAGGAGAAGATATCAGAGGCACAAGAAGTGTTGGGTCAGACTTTGCAGCGCCAAAAAGAAGCCGAGGTTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGTACCGAGCCAAAAAAACAGCTGAATCAAATAATAAGAGGGAATTTGAGGCTTTGCGTCTGAAGATAGACATAGATTTCCAGCGCCACAAGGAGGATCTACGCAGACTTGAGCATGACATTCCGCGCCTTAAAGCATCTGTTCGTTCGGCTGTGTTGCACCACCAGTCAAATACTTCAGAAAAAGAAGCTAATAACAATAGAGAATGCATTATATGTATGAAAGATGATGTCTCCGTTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGAAAAGAAGGAAATGCTTCTTGTCCTTTCTGCCTGGTTCAAATCCAACAGAGAATCCGCGTATTTGGGGAATGA 1950 0.4272 MEPKLPSEEILQKLVYAYLWEKGYERTAEVFRNDTQLTEPPHGMLLFTFILAFATYVPFIFFSLSLTHYFLILFNQEPSRLLLDIWNHFYERFNPRDRHHMGQTSRQNLQQPGNSSSQSQVILQQRSNTSTQSQVIVQQPSNSSTQSQDLLQPLDIGPLMNNATAQKIWDETPFQHHSSFGSGAKLMSCDVSSDGNIVASGGHGAYGKKPEKVLRYTVHDAHRHRETVRSLDLEREIEIPKRFNLSPSMEDLLKRNVTMFAAGFRAITKLQLQAKANLSGRSVMSNLDSPVVSGADVAVHQCGHSRFSDNQDAVNSVLSKFRDLNLDKNFEFGAEDQKDEVIQSMFHQIKDLEKQAKARKEWAQRTALNAAKKLSDNMTELTTLRTDREDTQKLQALEDTTMKEMLSEMEKGLRAASGQVDRAVEAVKRLETENAEIRAEMEASKLSASESDTACLEVAKKEKKILKKLQAGEKQKAELQKEVSDLKEKISEAQEVLGQTLQRQKEAEVKWKEELKAQEDALALVEEEYRAKKTAESNNKREFEALRLKIDIDFQRHKEDLRRLEHDIPRLKASVRSAVLHHQSNTSEKEANNNRECIICMKDDVSVVFLPCAHQVMCAKCSDEYGKEGNASCPFCLVQIQQRIRVFGE 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02785 649 ProSiteProfiles Zinc finger RING-type profile. 597 636 IPR001841 -
Vifa4g02785 649 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Vifa4g02785 649 PANTHER OS05G0141500 PROTEIN 113 646 IPR046934 -
Vifa4g02785 649 CDD RING-HC_MIP1-like 595 646 - -
Vifa4g02785 649 MobiDBLite consensus disorder prediction 104 124 - -
Vifa4g02785 649 Coils Coil 413 447 - -
Vifa4g02785 649 SMART ring_2 597 636 IPR001841 -
Vifa4g02785 649 MobiDBLite consensus disorder prediction 100 124 - -
Vifa4g02785 649 Coils Coil 554 574 - -
Vifa4g02785 649 Pfam Zinc finger, C3HC4 type (RING finger) 594 642 - -
Vifa4g02785 649 SUPERFAMILY RING/U-box 587 642 - -
Vifa4g02785 649 Coils Coil 462 535 - -
Vifa4g02785 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 648 IPR013083 -
Vifa4g02785 649 SMART Lish 7 39 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02785 Vifa-Chr4 881858372 881861115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02785 562 647 C3H Transcription Factor Family AT1G73950 31.818 1.41e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02785 - - adu:107483267 541.962