Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02784 ATGAAGGATTTGTTGAAGAGAAATGTTACAATGTTTGCTGCTGGTTTTAGAGCAAACACTAAACTCCAGTTGCAGGCGAAGGCCAATCTTCCTGGTCGTAGTGCTATGTCTTGTTTGGATTCTCCTGTTGTATCTGGGGCTGATGTTGCGGTTGATCAGTGTGGACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGCGGCAGAGGATCAGAAGGATGAGGTGATAGTGAGTATATTTCATCAGATAAAAGATTTGGAGAAACAGGCCAAAGAACGAAAAGAATGGGCTCATCTGAAAGCACTTCAAGCGGCAAAGAAGCTAAGCGGTGACATGACTGAACTCAAAACGTTACGGATGGAAAGAGAGGAGACCCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGATACAACCATGAAGAAACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCGAAAAAGGAGAAAAAATGCTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAGGCTAAGCTACAGAAGGAAGTTTCCAATATGAAAGAGAAGATATCAAAGGCACAAGAAGTGCTGGGTCAGACTTCACAGCGCCAAAAAGAAGCTGAGGTTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGCGCCGAGCCAAGGAAACAGCTGAATCAAATAATAAGAGGGGATTTGAGGCTTTGCGTCTGAAGATAGATATAGATTTCCAGCGCCACAAGGATGATCTACGCAGACTTGAGCATGATCTTTCGCGCCTTAAAGCATCTGTTCATTCTGCTGTGTTGCACCAGCAGTCAAATACTTCACCTATAAGTGACTTTGAGGGTACAAAGCCTCAAAGAGAGTCAATTGCTAAGCTGCTTCTGGATTTGGATAACCTGGATGATTTATCTGAAAAAGAAGCTAATAACAACAGAGAATGCATTATATGTATGAAAGATGAGGTCTCCGTTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGCGATGAGTATGGAAAAAAGGGAAAGGCTTCTTGTCCTTGCTGCCGGGTTCAAATCCAACAGAGAATCCGCGTATTTGGGGCATGCTCTTAA 1308 0.4335 MKDLLKRNVTMFAAGFRANTKLQLQAKANLPGRSAMSCLDSPVVSGADVAVDQCGHSRFPDNQDAVNSVLSKFRDLNLDENLEFAAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHLKALQAAKKLSGDMTELKTLRMEREETQKLKKGKQALEDTTMKKLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKCLKKLLAWEKQKAKLQKEVSNMKEKISKAQEVLGQTSQRQKEAEVKWKEELKAQEDALALVEEERRAKETAESNNKRGFEALRLKIDIDFQRHKDDLRRLEHDLSRLKASVHSAVLHQQSNTSPISDFEGTKPQRESIAKLLLDLDNLDDLSEKEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKKGKASCPCCRVQIQQRIRVFGACS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02784 435 PANTHER OS05G0141500 PROTEIN 2 430 IPR046934 -
Vifa4g02784 435 CDD RING-HC_MIP1-like 379 430 - -
Vifa4g02784 435 SUPERFAMILY RING/U-box 380 427 - -
Vifa4g02784 435 Coils Coil 263 290 - -
Vifa4g02784 435 Pfam Zinc finger, C3HC4 type (RING finger) 378 426 - -
Vifa4g02784 435 Coils Coil 309 329 - -
Vifa4g02784 435 ProSiteProfiles Zinc finger RING-type profile. 381 421 IPR001841 -
Vifa4g02784 435 SMART ring_2 381 420 IPR001841 -
Vifa4g02784 435 Coils Coil 161 202 - -
Vifa4g02784 435 Coils Coil 224 251 - -
Vifa4g02784 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 432 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02784 Vifa-Chr4 880724160 880728911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02784 372 431 C3H Transcription Factor Family AT1G73950 41.667 1.55e-08 54.7