Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02781 ATGCCAGTTCCACTTGCCCCCTACCCAACTCCACCACCAGCTCCATATACAGCACCAACAACAAATGGTTCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTGGTCTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTTACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGTGGAGCGACGAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGTAACTGCAGGATGCTTCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCTTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 444 0.4707 MPVPLAPYPTPPPAPYTAPTTNGSQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02781 147 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g02781 147 PANTHER PROTEIN LSD1 14 57 IPR040319 -
Vifa4g02781 147 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g02781 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Vifa4g02781 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Vifa4g02781 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Vifa4g02781 147 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Vifa4g02781 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Vifa4g02781 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Vifa4g02781 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02781 Vifa-Chr4 878436785 878437862 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa4g02781 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02781 - - twl:120016420 263.077