Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02779 ATGGCTGGTTTGGATTTAGGAAGTGCATCGCGCTTTATGCAAAACCTTCACAGACAAGAGTTGCACCTTCAACAGCAGCATCACCAGCACCATCACGATTCCGAAGAACAAGAATCGAATCGTGGTGGTGGTGGTGTTGGTGGTGCGGCACCGTTTTCATCCAACGAGGATGATGACCGAAGCCAAGGCATGGAGTTAGGTTCGGCTGCGGGTCCAGGTGACGTAGTCGGACGTCGTCCACGTGGCAGACCACCAGGGTCGAAAAACAAGGCAAAACCGCCGGTGATTATTACGAGAGAAAGCGCCAACACTCTCCGAGCTCATATTCTCGAAGTTGCTAGCGGTTCTGATGTTTTTGAATGTGTTACGAACTACGCTCGTCGCCGTCAGCGTGGGATCTGTGTTTTGAGCGGAACTGGGACGGTTACGAATGTTAGTCTCAGGCAGCCGGCGGCGGCTGGTGGTGCTGTGACTCTTCATGGAAGATTTGAGATATTGTCTTTGTCTGGATCTTTTCTGCCACCGCCGGCTCCTCCTGGAGCTACTAGTTTGACGATTTATCTTGCAGGAGGTCAGGGGCAGGTCGTCGGAGGAAGTGTGGTTGGTGAACTCATTGCGGCGGGGCCGGTGATTGTGATTGCTGCTTCGTTTACTAATGTGGCTTATGAGAGGCTTCCTTTGGATGAAGAGGAACAGGTTCAGATGCAGCAAGTTGCTGGCGCTGGTGGTTCTCAAGGCTCTGGAAGTGGTGGTGCCGGTGGCGGTGGGAATACTAGTCCATTTCCAGACCCATCTTCTGGTTTGCCGTTTTTCAATCTGCCTATGAATATGCAGAATGTTCAGTTGCCTGTTGACGGTGCTGTTTGGGCGGGAAACAACTCAGCTTCACGTCAACCTTTTTGA 903 0.5205 MAGLDLGSASRFMQNLHRQELHLQQQHHQHHHDSEEQESNRGGGGVGGAAPFSSNEDDDRSQGMELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTNYARRRQRGICVLSGTGTVTNVSLRQPAAAGGAVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLDEEEQVQMQQVAGAGGSQGSGSGGAGGGGNTSPFPDPSSGLPFFNLPMNMQNVQLPVDGAVWAGNNSASRQPF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02779 300 FunFam AT-hook motif nuclear-localized protein 105 232 - -
Vifa4g02779 300 Gene3D - 105 239 - -
Vifa4g02779 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 275 IPR014476 GO:0003680
Vifa4g02779 300 MobiDBLite consensus disorder prediction 22 39 - -
Vifa4g02779 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 234 - -
Vifa4g02779 300 MobiDBLite consensus disorder prediction 234 268 - -
Vifa4g02779 300 CDD DUF296 106 189 IPR005175 -
Vifa4g02779 300 MobiDBLite consensus disorder prediction 237 268 - -
Vifa4g02779 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 219 IPR005175 -
Vifa4g02779 300 PIRSF ESCAROLA 8 300 IPR014476 GO:0003680
Vifa4g02779 300 ProSiteProfiles PPC domain profile profile. 102 239 IPR005175 -
Vifa4g02779 300 MobiDBLite consensus disorder prediction 22 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02779 Vifa-Chr4 877593523 877594425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02779 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.331 6.88e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02779 - - pvu:PHAVU_003G230600g 360.147