Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02778 ATGGATTCCCGCTCACCTCCACCACCCCCAACCATGATGGTGGGACCCACATCTTACGCTCCGACCAACACCTCCATGATCAGCCCTAATTCTTCCACAACCAACCTCATGTCTCCGGCCACCGCTCGTTTTCCTTTCACCTCGCAGCCGCAATCGGACCCGTTCGCCGTCACTCACGACAGCCCTTCCTCGCCGTCCACGCTTGCGAAGAAAAAGCGTGGCCGGCCGAGGAAATACTCCCCCGACGGTAACATTGCCCTTGCTTTGGCTCCGAATCGTGTTTCTTCCCCTGCCGCTGCTACCTCCGCTTCCGCTGGAGATTCCGGAAACGCGGAGGCTCCTGCGAAGAAACATAGAGGAAGACCTCCTGGCTCCGGGAAGAAACAGTTAGATGCGCTTGGAGCTGGTGGGATTGGATTCACTCCACACGTTGTCTTGGTGGAGTCTGGTGAGTCAGGGCCTCGGACAGTTTGTATTCTTTCTGCCAATGGTGCAATCAGCAGTGCAACCCTTCGACAGCCATCAGGTGGTATTGCAAGATATGAGGGTCAATTTGAGATCATATCATTATCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAGTGCTAATTGCAGCGTCAACGATACAGGTCATTGTGGGTAGCTTTATTATGGATCTGAAAAAGTCAAGCTCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCTCAAATGTTGAACTTCGGTGCACCTACAACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCAGAGGAAAATGAGCATAATGATCATAACAGTAATTTTAGTAGGGGGCCTGCACTCTACAACAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCACCATCCGCTATGGGCAGGCCAAACTCATCAGTGA 933 0.5155 MDSRSPPPPPTMMVGPTSYAPTNTSMISPNSSTTNLMSPATARFPFTSQPQSDPFAVTHDSPSSPSTLAKKKRGRPRKYSPDGNIALALAPNRVSSPAAATSASAGDSGNAEAPAKKHRGRPPGSGKKQLDALGAGGIGFTPHVVLVESGESGPRTVCILSANGAISSATLRQPSGGIARYEGQFEIISLSGADGRVLGGAVAGVLIAASTIQVIVGSFIMDLKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENEHNDHNSNFSRGPALYNNANQPVHNNMQQMYHHPLWAGQTHQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02778 310 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g02778 310 CDD DUF296 141 219 IPR005175 -
Vifa4g02778 310 SMART AT_hook_2 70 82 IPR017956 GO:0003677
Vifa4g02778 310 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Vifa4g02778 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 220 - -
Vifa4g02778 310 MobiDBLite consensus disorder prediction 228 264 - -
Vifa4g02778 310 MobiDBLite consensus disorder prediction 1 128 - -
Vifa4g02778 310 MobiDBLite consensus disorder prediction 16 68 - -
Vifa4g02778 310 Gene3D - 148 193 - -
Vifa4g02778 310 MobiDBLite consensus disorder prediction 228 289 - -
Vifa4g02778 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 190 274 IPR039605 GO:0003680
Vifa4g02778 310 MobiDBLite consensus disorder prediction 275 289 - -
Vifa4g02778 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02778 Vifa-Chr4 875273744 875284173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02778 48 310 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 40.476 4.85e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02778 - - gmx:100789717 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07550 1 1171372459 1171375508 Vifa4g02778 4 875273744 875284173 PCT