Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02777 ATGGATTCCCGCTCACCTCCACCACCCCCAACCATGATGGTGGGACCCACATCTTACGCTCCGACCAACACCTCCATGATCAGCCCTAATTCTTCCACAACCAACCTCATGTCTCCGGCCACCGCTCGTTTTCCTTTCACCTCGCAGCCGCAATCGGACCCGTTCGCCGTCACTCACGACAGCCCTTCCTCGCCGTCCACGCTTGCGAAGAAAAAGCGTGGCCGGCCGAGGAAATACTCCCCCGACGGTAACATTGCCCTTGCTTTGGCTCCGAATCGTGTTTCTTCCCCTGCCGCTGCTACCTCCGCTTCCGCTGGAGATTCCGGAAACGCGGAGGCTCCTGCGAAGAAACATAGAGGAAGACCTCCTGGCTCCGGGAAGAAACAGTTAGATGCGCTTGGAGCTGGTGGGATTGGATTCACTCCACACGTTGTCTTGGTGGAGTCTGGTGAGGACATTACAGAAAAAGTGATGGCCTTTTCTCAGTCAGGGCCTCGGACAGTTTGTATTCTTTCTGCCAATGGTGCAATCAGCAGTGCAACCCTTCGACAGCCATCAGGTGGTATTGCAAGATATGAGGGTCAATTTGAGATCATATCATTATCAGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAGTGCTAATTGCAGCGTCAACGATACAGGTCATTGTGGGTAGCTTTATTATGGATCTGAAAAAGTCAAGCTCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCTCAAATGTTGAACTTCGGTGCACCTACAACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCAGAGGAAAATGAGCATAATGATCATAACAGTAATTTTAGTAGGGGGCCTGCACTCTACAACAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCACCATCCGCTATGGGCAGGCCAAACTCATCAGTGA 966 0.5114 MDSRSPPPPPTMMVGPTSYAPTNTSMISPNSSTTNLMSPATARFPFTSQPQSDPFAVTHDSPSSPSTLAKKKRGRPRKYSPDGNIALALAPNRVSSPAAATSASAGDSGNAEAPAKKHRGRPPGSGKKQLDALGAGGIGFTPHVVLVESGEDITEKVMAFSQSGPRTVCILSANGAISSATLRQPSGGIARYEGQFEIISLSGADGRVLGGAVAGVLIAASTIQVIVGSFIMDLKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENEHNDHNSNFSRGPALYNNANQPVHNNMQQMYHHPLWAGQTHQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02777 321 CDD DUF296 141 230 IPR005175 -
Vifa4g02777 321 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g02777 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 200 285 IPR039605 GO:0003680
Vifa4g02777 321 SMART AT_hook_2 70 82 IPR017956 GO:0003677
Vifa4g02777 321 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Vifa4g02777 321 MobiDBLite consensus disorder prediction 240 275 - -
Vifa4g02777 321 MobiDBLite consensus disorder prediction 286 300 - -
Vifa4g02777 321 MobiDBLite consensus disorder prediction 16 68 - -
Vifa4g02777 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 231 - -
Vifa4g02777 321 MobiDBLite consensus disorder prediction 240 300 - -
Vifa4g02777 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 230 IPR005175 -
Vifa4g02777 321 MobiDBLite consensus disorder prediction 1 129 - -
Vifa4g02777 321 ProSiteProfiles PPC domain profile profile. 136 281 IPR005175 -
Vifa4g02777 321 Gene3D - 142 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02777 Vifa-Chr4 875273744 875284173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02777 48 321 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 41.964 2.85e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02777 - - gmx:100789717 343.199