Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02776 ATGGAGGAAATGAAGACACCAATAAACATATCAGCAGACAGCAGCTGGTTATCCGACTTGGAAATGGTGGATGAATACATATTGCTTGATAAGGACTGCAACTTGAAGTCGAACTCGAACTTTCTTGATCTCGACGATGAACAAGAGTTTCTATCACATGATATAGCTAGTGTCTTTGTCTTTGAGGAGCAGAGAGAGACCATCCGTCAATGTTTAGATACAGAATGTATTTCCACAACTCTTACTGAAACATTTACAGATGAAACCAGTTTTGAGTCTTTTGATAACTTTGATTTTGATTTTGGAAAACCAACTAAACAGATGAAAACAATTGATTACAGTGACAATGATAACATCACCGGAAAAAAAAATTATCAGTTGCCTCAGATCTTGTCTTTTGACAATCCAAACCCGACAGAGTTTTGTGCGTATAATCAAAAACAAAACGAAACAATGAGTTCGGCTTCATTGGAAAGCAGAAAATTTTCGGCTCAAAACTCTAAAGAGTCTTCGAAAGCATCACGAGCTAGGAGGTCTCCAGCTCATATAAAAGATCACATTATGGCGGAGAGAAAGAGAAGAGAGAAGCTCAGCCAAAGCTTCATTGCTCTTGCTGCTCTCATTCCGGACTTAAAGAAGATGGACAAGGCTACTATATTAGCAGGGACAATCAAATACGTCAAAGAGCTTAAGGAACGTTTGGAGAGTTTAGAAGAGAAGAGAAAGAAACCAAAGGCAGATCAGTCGACGGTCACTCCAATCAAACCAGATGTTGAGCATTATTCATCATCTGAGGAGAGTACTGAAACTGAAAGTGCTGCTGATGGTACTTCCACTGAATCTTTCTTCAAGATGGAAGCAAAAGTTTCAGAGCAACACATGTTGATTCGGATCCATTGCCAAAAGCATAATGGTCTTCTTGTTAAAATCATCTCCGAGATTCAATGTTTTGAATTATTTGTTGTCAATAACAGTGTTCTAGCTTTTGGAGAATCTATCCTCGACATTACCATCATTGCTGAGATTGGTGAAGGCTACAACTTGACTATAAAAGAACTCGTCCACAACCTACGTTTGGCCGCATTGAAGTTTATGTCAGCGTAA 1104 0.3886 MEEMKTPINISADSSWLSDLEMVDEYILLDKDCNLKSNSNFLDLDDEQEFLSHDIASVFVFEEQRETIRQCLDTECISTTLTETFTDETSFESFDNFDFDFGKPTKQMKTIDYSDNDNITGKKNYQLPQILSFDNPNPTEFCAYNQKQNETMSSASLESRKFSAQNSKESSKASRARRSPAHIKDHIMAERKRREKLSQSFIALAALIPDLKKMDKATILAGTIKYVKELKERLESLEEKRKKPKADQSTVTPIKPDVEHYSSSEESTETESAADGTSTESFFKMEAKVSEQHMLIRIHCQKHNGLLVKIISEIQCFELFVVNNSVLAFGESILDITIIAEIGEGYNLTIKELVHNLRLAALKFMSA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02776 367 Gene3D - 166 246 IPR036638 GO:0046983
Vifa4g02776 367 PANTHER BHLH TRANSCRIPTION FACTOR 83 364 - -
Vifa4g02776 367 MobiDBLite consensus disorder prediction 153 170 - -
Vifa4g02776 367 SMART finulus 187 236 IPR011598 GO:0046983
Vifa4g02776 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Vifa4g02776 367 Pfam Helix-loop-helix DNA-binding domain 186 230 IPR011598 GO:0046983
Vifa4g02776 367 MobiDBLite consensus disorder prediction 153 183 - -
Vifa4g02776 367 Coils Coil 220 247 - -
Vifa4g02776 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 249 IPR036638 GO:0046983
Vifa4g02776 367 MobiDBLite consensus disorder prediction 237 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02776 Vifa-Chr4 874946490 874947992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02776 93 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 36.364 3.22e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g02776 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02776 - - psat:127135305 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02776 4 874946490 874947992 Vifa4g02776 4 874946490 874947992 ECH