Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02775 ATGAATGTGTCAGACACCAACAAATGGATATCTGATTTAGAAATGGATGAATACAATTTATTTCCAGAAGAATGCAACCTGGATTTCCTTGATGCTGATGAGAAACAAGAGTTTCTTTCACATGAAATAGCTACTGTCTTTGAAGAAGAAAACCAACATCAACATTTGAGTTCAGAGTGCACTTCCACAACTCTCACCAACTTGCTCACTGATGAAACCTGTTTTGAGTCATTTGACTTTGGTTTTGAGAGACCAACCAATGATTACAATGACAACATCACAGCTGAAACCATGTCACCAAAACTGTCTCCATCATCTTCTATCTCATCTTTTCAGTCTCAGATTCTCTCTTTTGAAAACCTCCCAAATTCACCTGCTACCAACACCCCCCAATTTTTTGAATTTGACCATACTCTAAACTCGAAACCCAACGAAACAGTGTCGGTATCTCCACCCCAGATGGAAAACACTCATGTCTTCACTCAAACTCTAAAAGGGTCATCAAAAAATCAAAACTTGGAAACAAAAACCTCGCAACCAAAGAGATCTCGAGCTAACGCAGAGGATCATATCATGGCTGAGAGAAAGCGAAGAGGGATACTCAGCCAGAGTTTCATTGCTCTCGCTGCTCTTGTTCCTAACCTCAAAAAGATGGACAAAGCTTCTGTATTAGCTGAGTCTATTAAATACGTGAAAGAGCTTAAAGATCGTTTGGAAGTTTTGGAAGAACAAGACAAGAAAACAAATGCAGAAACTGCAGTTGTTCTGAACAAACCAGACATATGTAGCGATGAAGATAACTCCTCATGTCATGAGAACGTTGAAGTTGCTGGGGGTGGTGACAGTGAACCACTCTTACAAGTGGAAGCTAGAGTGTCAGGGAAAGAGATGCTTATAAGGATCCAGTGCAAGAAGAAGAAGGGTGTTTTGGTAAAAATGATGGGAGAGATTCAAAGTTTAGAATTGTTTGTTGTGAATAGCAATGTCTTACCCTTTGGTGATTCTGTCCTTGACATTACCATCATTGCTCAGATTGGTGAAGGGTACAATTTGAGCATAAAGGAGCTTGTGAAGAAGCTTCGCATGGAAGCATTGCAGTTTATGTCATCATAA 1113 0.398 MNVSDTNKWISDLEMDEYNLFPEECNLDFLDADEKQEFLSHEIATVFEEENQHQHLSSECTSTTLTNLLTDETCFESFDFGFERPTNDYNDNITAETMSPKLSPSSSISSFQSQILSFENLPNSPATNTPQFFEFDHTLNSKPNETVSVSPPQMENTHVFTQTLKGSSKNQNLETKTSQPKRSRANAEDHIMAERKRRGILSQSFIALAALVPNLKKMDKASVLAESIKYVKELKDRLEVLEEQDKKTNAETAVVLNKPDICSDEDNSSCHENVEVAGGGDSEPLLQVEARVSGKEMLIRIQCKKKKGVLVKMMGEIQSLELFVVNSNVLPFGDSVLDITIIAQIGEGYNLSIKELVKKLRMEALQFMSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02775 370 PANTHER BHLH TRANSCRIPTION FACTOR 35 366 - -
Vifa4g02775 370 Gene3D - 172 251 IPR036638 GO:0046983
Vifa4g02775 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Vifa4g02775 370 MobiDBLite consensus disorder prediction 162 189 - -
Vifa4g02775 370 Pfam Helix-loop-helix DNA-binding domain 189 234 IPR011598 GO:0046983
Vifa4g02775 370 Coils Coil 224 251 - -
Vifa4g02775 370 SMART finulus 191 240 IPR011598 GO:0046983
Vifa4g02775 370 MobiDBLite consensus disorder prediction 162 180 - -
Vifa4g02775 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 251 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02775 Vifa-Chr4 874634756 874636179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02775 113 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.600 1.44e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g02775 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02775 - - gmx:100788128 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02775 4 874634756 874636179 Vifa4g02775 4 874634756 874636179 ECH
Vifa1g07520 1 1167827839 1167829167 Vifa4g02775 4 874634756 874636179 PCT