Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02774 ATGGAGGAATCATGGACTAATTGGTTATGTGAAATGGATCCAGATGGTTACAGTTTCATCAACCAATCAAGCATAAATGCAGACATTGTTAGTAGTTTTGAGAGTAACTTAGAGTTAGAAAGGCCTTCAAAGTTACTCAAAACAGCTTCCTCATCAACTTGTTCATACAATATTTCGTTTGAAAATGAAACTCCACCACCAGTAAGAGTTGAACCAGCTTTGAAGCCAAAATACAAAACTGTGAACTCAAAGATGAACAGTTCATTTTTAAAATCTACAACTCATCACATACCAGATCATATTATTGCTGAGAGAATGAGGAGAGAAAAGATTAGCCAACAATTCATAGCTCTTTCAGCTCTTATTCCAAATCTAAAAAAGGTAGACAAGGCTTCTGTGTTATGTAATGCTATTAAATATGTGAAGGAGCTTAAGGAGCAAGTGAAACTGTTGGAGGAACAAACCAAAAAGAAAAGTGTAGAATCAACGATGGATGAAGATATTTCGTACACTTCCTCATGTAATGAAACCTCAAAAACAAATCTGATACTGCCAGAAGTTAAAACTAGGTTGTCGGGTAAGAATGTGGTGATTCGAATCCTCTGTGAGAAAGATAAGGCAGTGATGGTGAATGTGTATAGAGAGATAGAGAAACTTCATCTCTCAGTTATCAATGGAAGTTCATTGTCCTTTGGTTAG 699 0.3591 MEESWTNWLCEMDPDGYSFINQSSINADIVSSFESNLELERPSKLLKTASSSTCSYNISFENETPPPVRVEPALKPKYKTVNSKMNSSFLKSTTHHIPDHIIAERMRREKISQQFIALSALIPNLKKVDKASVLCNAIKYVKELKEQVKLLEEQTKKKSVESTMDEDISYTSSCNETSKTNLILPEVKTRLSGKNVVIRILCEKDKAVMVNVYREIEKLHLSVINGSSLSFG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02774 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Vifa4g02774 232 Gene3D - 98 167 IPR036638 GO:0046983
Vifa4g02774 232 Coils Coil 141 161 - -
Vifa4g02774 232 SMART finulus 101 150 IPR011598 GO:0046983
Vifa4g02774 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 158 IPR036638 GO:0046983
Vifa4g02774 232 PANTHER BHLH TRANSCRIPTION FACTOR 23 232 - -
Vifa4g02774 232 Pfam Helix-loop-helix DNA-binding domain 100 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02774 Vifa-Chr4 873363947 873365509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02774 99 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.000 8.35e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g02774 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02774 - - mtr:11405744 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02774 4 873363947 873365509 Vifa4g02774 4 873363947 873365509 ECH
Vifa1g07518 1 1167101304 1167102651 Vifa4g02774 4 873363947 873365509 PCT