Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02773 ATGAAGCATTGTGCACCATCTCACAAACAAATCAACAACACTTTCTCTCTTCTTTTCCTTCATCCTTCAACCAAGGGAATGGAACACACTAGTTTGTTTCATGATAATGAACATCCAATGGATTCATTTGGATTCAACTTTGATGATATTTCATACTTCAACTCTTTCTCAGCATCCACACCTGAGAGTACTAATTCCTCTCATAACAATAATAAGAGACTCCAGTCAGAAAGCACACAAAACAACTCTTTCCCCATTGAAAGTCCTATTCAATCTATTGCCTCTGCAACACCACCAACTAAGCTAAAACTCAAGGCTTCTTCATCTTCCAAAATTATTTCTTTTGATAATATAAATAAGGTTAAGAAGCCTAAAACCGAGTCAGGGTATGGTGAAAACTTGAATTTTGGAAGTGAGTATGATAAACAAGAGAACAAGGCTGCGACAATGACAACGATAACCAACAGAAACCCGATCCAAGCACGAGATCACGTAATTGCTGAAAGAAAACGAAGGCAAAAGCTTAACCAGAAATTAATTACTCTTTCATCCATTCTTCCAGGTCTCAAAAAGATGGACAAGGCAACTATTGTAGAAGATGCTACAAATCATCTAAAGCAATTAAAAGAAAGAGTAAAGAGTTTAGAGGAACAAGTTGCTGATAGAAAAGTTGAAACTGCAGTCTATGCGAAGAGATCTATTCTCTTCTCCGATGATGATTGCGACCAAAACTCAGACCAATCACTCCCAAAAATCGAAGCAAGAGTATCTGGAAAAGACATGCTCATCAGAATCCACTGTGACAAACACAGCGGCCGAATTCCGACCGTGATACTCAACAGACTCGAAAAACATCATCTCACCATTCAGAGTAGTTCATTTTTGCCATTTGGAAGTAACTATATTGACATAACCATTGTTGCACAGATGAATAAAGAATATTGCTTGACCATAACAGATCTCATAAGAAGCATAAGTCAGGTTTTGAAGCAGCTCATTTGA 1002 0.3752 MKHCAPSHKQINNTFSLLFLHPSTKGMEHTSLFHDNEHPMDSFGFNFDDISYFNSFSASTPESTNSSHNNNKRLQSESTQNNSFPIESPIQSIASATPPTKLKLKASSSSKIISFDNINKVKKPKTESGYGENLNFGSEYDKQENKAATMTTITNRNPIQARDHVIAERKRRQKLNQKLITLSSILPGLKKMDKATIVEDATNHLKQLKERVKSLEEQVADRKVETAVYAKRSILFSDDDCDQNSDQSLPKIEARVSGKDMLIRIHCDKHSGRIPTVILNRLEKHHLTIQSSSFLPFGSNYIDITIVAQMNKEYCLTITDLIRSISQVLKQLI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02773 333 Gene3D - 151 224 IPR036638 GO:0046983
Vifa4g02773 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Vifa4g02773 333 PANTHER BHLH TRANSCRIPTION FACTOR 52 330 - -
Vifa4g02773 333 SMART finulus 165 214 IPR011598 GO:0046983
Vifa4g02773 333 MobiDBLite consensus disorder prediction 58 85 - -
Vifa4g02773 333 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Vifa4g02773 333 Coils Coil 198 225 - -
Vifa4g02773 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02773 Vifa-Chr4 872089700 872090861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02773 108 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.710 1.21e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g02773 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02773 - - tpra:123921001 395.971