Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02769 ATGCGCCTCCTTCTATCACTACTCCTGTTCCTCCTTATTTCCACAACACATAGTACCTCCGAATACCAAACCTTGCTCTCATTTAAATCATCTTCCATCACAACCGACCCAACCAACTCCCTCTCCTCATGGACCACAAAAACCACCCACTGTTCCTGGCACGGCGTCCAATGCGGCCAACGCCGACACGTTATCTCCATCGACCTCTCTTCACTCTCCCTCACCGGCGTACTCTCCGACGACATTTCAAATCTACCTTTCCTCACCAACCTCTCCCTGGCTGATAACAAATTCTCCGGCCCTATTCCTCCTTCTCTCTCATCTCTCTCTTCTCTTCGCTACCTCAACCTCTCCAACAATGTCTTCAACGGCACTTTCCCTTCTCAGCTTTCTACTCTCTCCAATCTTCAGGTTCTTGATCTCTACAACAATAACATGACCGGTTCACTTCCTCTATCAGTTACCCACATGTCGTTTCTCCGTCATTTGCATCTCGGTGGAAACTTTTTCACCGGGAGAATCCCGTCAGAGTATGGTGTTTGGTCTCATCTCGAGTATCTTGCTGTTTCCGGTAACGAGCTTTCCGGTCATATTCCGCCGGAGATCGGGAACCTTACTTCACTCCGCGAGCTTTACATTGGTTATTACAACACCTACGACGGCGGTATCCCACCGGAGATTGGTAACTTATCGGAGATGGTGAGGCTTGACGCTGCTTACTGTGGTTTAACCGGTGAGGTTCCGGCGGAGTTGGGTAAGCTTCAGAAATTGGATACTTTGTTTCTTCAGGTAAATGCGCTTTCCGGGTCTCTTACGCCGGAGCTTGGAAGCTTGAAGAGCTTGAAGTCTATGGATTTGTCGAACAATGGTTTCACCGGTGAAGTTCCGGTGAGTTTTTCTGAGCTGAAGAATCTTACTCTTTTGAACTTGTTTAGAAACAAGCTTCATGGAGCGATACCGGAGTTTATCGGCGAGATGCCGGCGCTCGAAGTATTGCAGATTTGGGAGAATAACTTCACCGGAAGCATTCCTCAGAGTTTGGGGAAAAACGGGAAGCTTACACTTGTTGATGTTTCTTCAAACAAGTTAACTGGTTCTCTTCCACCTTATATGTGTTTTGGGAACAAGCTTCAAACTTTGATAACTTTAGGGAATTTCCTTTTTGGTCCCATTCCAGATTCACTTGGAAAGTGTAAATCTTTAAGCAGAATTCGAATGGGTGAGAATTTTCTTAATGGGTCAATTCCAAAAGGACTTTTTGGTCTTCCGGAGCTCACACAAGTTGAGCTTCAGGATAATCTTTTATCTGGGAACTTTCCTCAACCTGTTTCTATGTCTCCAAATCTTGGTCAGGTTACTCTTTCCAACAACAAGCTTTCTGGGCCGTTACCACCTTCCATTGGAAACTTCACCAGTGTTCAAAAGCTTCTCCTTGATGGAAACCAGTTTTCAGGTGAAATCCCTTCTGAGATTGGAAAGTTACAACAGCTTTCTAAGATAGATTTTAGTCACAACAGATTCTCTGGTTCCATTGCGCCTGAGATTAGTCACTGTAAGCTTTTAACTTTTGTTGATCTTAGTCGTAACGTGCTTTCCGGTGAGATTCCTAATGAAATCACTAGCATGAGGATATTGAATTACTTGAATCTTTCAAAGAATCACCTTGTTGGTAGTATTCCAGGGTCAATTTCCTCAATGCAAAGCTTAACTTCTGTTGATTTTTCATACAATAATCTAACTGGTTTGGTTCCTGGGACTGGTCAATTTAGTTACTTTAACTACACTTCTTTCCTTGGTAACCCTGGACTTTGTGGACCTTATTTGGGTCCTTGCAAAGATGGTGTTGTTAATGGCTCTCATCAAGCTCATGTCAAAGGACCACTGTCTTCTACTGTGAAGCTTTTGCTTGTTGTTGGGTTGCTTGTGTGTTCCACTGTATTTGCTGTTGCCACAATCTTTAAAACTCGGTCTTTGAAAAAAGCTAGCAAAGCTCGTGCGTGGAAATTAACCGCATTCCAACGTTTGGACTTTACTGTCGACGATGTGCTTGATTCCTTGAAAGAGGATAATATCATAGGAAAAGGAGGTGCTGGCATTGTTTTCAAAGGCTCAATGCCTAATGGTGATCTTGTTGCTGTGAAAAGGTTACCTGCGATGAGTAGAGGCTCTTCACATGATCATGGTTTTAATGCTGAGATTCAAACTTTAGGGAGAATTCGACACAGACACATTGTTAGATTATTGGGTTTCTGTTCAAACCATGAAGCAAATCTCCTGGTTTATGAGTACATGCCTAATGGAAGTTTAGGTGAAGTTCTTCATGGTAAGAAAGGCGGTCATTTGCATTGGGATACAAGGTATAAAATTGCCGTGGAATCTGCCAAGGGTCTTTGTTATCTGCATCATGACTGTTCTCCACTTATTGTTCATCGTGACGTGAAATCAAACAATATCTTACTCGATACAAGTTTTGAAGCCCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATTCTGGAACTTCTGAATGCATGTCTGCTATTGCAGGTTCTTATGGATACATAGCTCCAGAGTATGCATACACACTGAAAGTCGATGAGAAAAGCGACGTATACAGCTTCGGCGTGGTACTCTTAGAGCTTGTAGCAGGAAGAAAACCAGTTGGAGAATTCGGAGATGGAGTCGACATTGTACAATGGGTGAGAAAAATGACTGATTCAAACAAGGATGGTGTTCTAAAAGTTCTTGATCCACGACTTCCCTCGGTTCCAATTCACGAGGTGATGCATGTGTTCTACGTAGCCATGCTATGCGTCGAAGAACAAGCTGTTGAAAGACCAACAATGCGCGAAGTTGTTCAAATGCTTACCGAGCTTCCGAAACCATCACAAAGTTCAAAACATGTTGAAGAGGACTTAACTGCATTAACTATCACTGAATCCTCTTTGTCATCATCAAACAGTTTAGAAGCTCCAGAAAAAGAACCTAAAGATCTTCTTAGTATATGA 3012 0.4303 MRLLLSLLLFLLISTTHSTSEYQTLLSFKSSSITTDPTNSLSSWTTKTTHCSWHGVQCGQRRHVISIDLSSLSLTGVLSDDISNLPFLTNLSLADNKFSGPIPPSLSSLSSLRYLNLSNNVFNGTFPSQLSTLSNLQVLDLYNNNMTGSLPLSVTHMSFLRHLHLGGNFFTGRIPSEYGVWSHLEYLAVSGNELSGHIPPEIGNLTSLRELYIGYYNTYDGGIPPEIGNLSEMVRLDAAYCGLTGEVPAELGKLQKLDTLFLQVNALSGSLTPELGSLKSLKSMDLSNNGFTGEVPVSFSELKNLTLLNLFRNKLHGAIPEFIGEMPALEVLQIWENNFTGSIPQSLGKNGKLTLVDVSSNKLTGSLPPYMCFGNKLQTLITLGNFLFGPIPDSLGKCKSLSRIRMGENFLNGSIPKGLFGLPELTQVELQDNLLSGNFPQPVSMSPNLGQVTLSNNKLSGPLPPSIGNFTSVQKLLLDGNQFSGEIPSEIGKLQQLSKIDFSHNRFSGSIAPEISHCKLLTFVDLSRNVLSGEIPNEITSMRILNYLNLSKNHLVGSIPGSISSMQSLTSVDFSYNNLTGLVPGTGQFSYFNYTSFLGNPGLCGPYLGPCKDGVVNGSHQAHVKGPLSSTVKLLLVVGLLVCSTVFAVATIFKTRSLKKASKARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVFKGSMPNGDLVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHEANLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVESAKGLCYLHHDCSPLIVHRDVKSNNILLDTSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVAGRKPVGEFGDGVDIVQWVRKMTDSNKDGVLKVLDPRLPSVPIHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPSQSSKHVEEDLTALTITESSLSSSNSLEAPEKEPKDLLSI 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02769 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 655 763 - -
Vifa4g02769 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 79 322 - -
Vifa4g02769 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Vifa4g02769 1003 MobiDBLite consensus disorder prediction 981 1003 - -
Vifa4g02769 1003 Gene3D Transferase(Phosphotransferase) domain 1 764 984 - -
Vifa4g02769 1003 Gene3D Ribonuclease Inhibitor 353 614 IPR032675 -
Vifa4g02769 1003 Gene3D Phosphorylase Kinase; domain 1 650 763 - -
Vifa4g02769 1003 SMART LRR_typ_2 278 301 IPR003591 -
Vifa4g02769 1003 SMART LRR_typ_2 302 326 IPR003591 -
Vifa4g02769 1003 SMART LRR_typ_2 566 589 IPR003591 -
Vifa4g02769 1003 SMART LRR_typ_2 494 518 IPR003591 -
Vifa4g02769 1003 SMART LRR_typ_2 133 156 IPR003591 -
Vifa4g02769 1003 SMART LRR_typ_2 109 128 IPR003591 -
Vifa4g02769 1003 SUPERFAMILY L domain-like 296 611 - -
Vifa4g02769 1003 Pfam Leucine rich repeat N-terminal domain 20 58 IPR013210 -
Vifa4g02769 1003 SUPERFAMILY RNI-like 66 388 - -
Vifa4g02769 1003 ProSiteProfiles Protein kinase domain profile. 686 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02769 1003 Pfam Protein kinase domain 688 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02769 1003 Gene3D Ribonuclease Inhibitor 13 77 IPR032675 -
Vifa4g02769 1003 Gene3D Ribonuclease Inhibitor 78 346 IPR032675 -
Vifa4g02769 1003 SMART serkin_6 686 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02769 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 330 615 - -
Vifa4g02769 1003 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 220 959 - -
Vifa4g02769 1003 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 974 - -
Vifa4g02769 1003 SUPERFAMILY Protein kinase-like (PK-like) 679 957 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02769 Vifa-Chr4 869539660 869542774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02769 13 1003 Receptor kinase-like Gene Family AT5G65700 78.693 0.0 1579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa4g02769 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02769 - - gmx:547592 1634.77