Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02760 ATGGGTCTTAATAACCAAGATGCTGGAAATAACAATTCAAACCTTCAACTTATTCTAGGCTTAGCCCTCACTCTCACCAAACAAGACACACCACCATCCAACAACAACCTTACAAAACCTTATTCATCAAGCAACAACAACAACTATGAAGCTGAACCATCTCTAACGTTGGGTTTATCTAGTTACTACGAAGAACCTCTTGATTTTTCCACACAAACAAACTCACCTCTCCATAGCGTTGTTTCATCTTTCTCTAGTGGTAGAGTCAAAAGAGAAAGAGACGTTAGCAGTGAAGAAATTGAAGTAACAGAGATAGAAAGAGTTTCTTCAAGAATTAGCGACGAAGAAGAAGACGGCGCCACCGCAACTAGGAAGAAACTTAGACTTACCAAAGATCAATCTGCCATGCTTGAAGAAAGCTTCAAACAACACAGCACGCTGAATCCTAAACAGAAGCAAGCCTTAGCCAGAGAGTTAAATCTAACCGCCCGACAAGTTGAAGTCTGGTTCCAGAACCGCAGAGCCAGAACAAAGCTGAAACAAACCGAGGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAACAGAAGGTTACAAAAAGAGGTTCAAGAATTAAAGGCACTGAAACAAGCACAACCTTTGTATATGCCTATGCCTGCTGCAACCCTTACTATGTGCCCTTCTTGTGAGAGGCTTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTTTCAGTGGCTCCTAAACCTCACTTTTACAATCCCTTCACAAATTCTTCTGCAGCATGTTGA 813 0.4108 MGLNNQDAGNNNSNLQLILGLALTLTKQDTPPSNNNLTKPYSSSNNNNYEAEPSLTLGLSSYYEEPLDFSTQTNSPLHSVVSSFSSGRVKRERDVSSEEIEVTEIERVSSRISDEEEDGATATRKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKQAQPLYMPMPAATLTMCPSCERLGGGVNGGSSNKSNFSVAPKPHFYNPFTNSSAAC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02760 270 Coils Coil 186 216 - -
Vifa4g02760 270 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Vifa4g02760 270 MobiDBLite consensus disorder prediction 29 48 - -
Vifa4g02760 270 Pfam Homeobox associated leucine zipper 180 215 IPR003106 GO:0006355|GO:0043565
Vifa4g02760 270 SUPERFAMILY Homeodomain-like 118 181 IPR009057 -
Vifa4g02760 270 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Vifa4g02760 270 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Vifa4g02760 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 250 - -
Vifa4g02760 270 SMART HOX_1 122 184 IPR001356 GO:0003677
Vifa4g02760 270 Gene3D - 117 185 - -
Vifa4g02760 270 FunFam Homeobox-leucine zipper protein 18 109 185 - -
Vifa4g02760 270 CDD homeodomain 124 181 IPR001356 GO:0003677
Vifa4g02760 270 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02760 Vifa-Chr4 863270766 863271818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02760 1 270 Homeobox Transcription Factor Family AT4G37790 58.219 4.79e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g02760 Homeodomain 5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02760 K09338 - gmx:100795135 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07487 1 1162295066 1162296161 Vifa4g02760 4 863270766 863271818 PCT