Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02756 ATGGGAAGATCACCTTGCTGTGACAAAGCCAATGTTAAAAGAGGTCCATGGTCACCAGAAGAAGACTCTAAACTCAAAGCTTATATCCAACAACATGGTACTGCTGGCAATTGGATAGCTCTTCCAAAGAAAATAGTAGGCCTCAAAAGATGTGGAAAAAGTTGTCGTCTTCGATGGCTAAATTATCTTCGTCCAAATCTTAGACATGGGAGATTCTCCGAAGAAGAAGATAACATTATTTGCAGCCTCTATGTCAATATTGGAAGCAGGTGGTCAGTTATAGCAGCACAGTTACCAGGACGAACAGATAATGATATAAAGAACCACTGGAACACAAGGTTGAAGAAGAAACTTTTGACAAAGCCAACGAAAGAGCAACAATCTGAAACTCGCCAAGTTTTCATCCTAAATCAAAAGATCAAGAGAGAAAATGCTTCTTCTATGCAAGACTATAACCTCAAGGAAGTTGAGTTCTATGATAATAATCAACTGCAGCCAGTGAATGCTAACATTTACTTCCCACAAGATGAACTATATTATCCATCCACAATGAATAACGTAACTTCTGCAGAGTTGACCTGTGTGAACCAGCACCAAGAAGACTATGGATCAACTAGGATTAGTGGTAGCACGAACTTGAATTCAATAGAAAGCACTAGTTGGGGGGATATGAGGTCTTTGATTAACTCACCTTTGGTTTCTGATTATGAAGGTTGTCAACAAGATGTTAGTTTCGATGAGAGTATGTTCTATGGAATGATCCAATCGCAATGA 774 0.3902 MGRSPCCDKANVKRGPWSPEEDSKLKAYIQQHGTAGNWIALPKKIVGLKRCGKSCRLRWLNYLRPNLRHGRFSEEEDNIICSLYVNIGSRWSVIAAQLPGRTDNDIKNHWNTRLKKKLLTKPTKEQQSETRQVFILNQKIKRENASSMQDYNLKEVEFYDNNQLQPVNANIYFPQDELYYPSTMNNVTSAELTCVNQHQEDYGSTRISGSTNLNSIESTSWGDMRSLINSPLVSDYEGCQQDVSFDESMFYGMIQSQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02756 257 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Vifa4g02756 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
Vifa4g02756 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vifa4g02756 257 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Vifa4g02756 257 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Vifa4g02756 257 Gene3D - 71 149 - -
Vifa4g02756 257 CDD SANT 71 111 IPR001005 -
Vifa4g02756 257 FunFam Transcription factor RAX3 7 69 - -
Vifa4g02756 257 Gene3D - 7 69 - -
Vifa4g02756 257 SMART sant 13 65 IPR001005 -
Vifa4g02756 257 SMART sant 68 116 IPR001005 -
Vifa4g02756 257 PANTHER OS09G0431300 PROTEIN 1 212 - -
Vifa4g02756 257 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Vifa4g02756 257 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vifa4g02756 257 CDD SANT 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02756 Vifa-Chr4 861451655 861452610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02756 1 164 MYB Transcription Factor Family AT5G65790 67.879 3.23e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g02756 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02756 K09422 - gmx:100791406 292.352