Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02755 ATGGGAAGATCACCTTGCTGTGACAAAGCCAATGTTAAAAGAGGTCCATGGTCACCAGAAGAAGACTCTAAACTCAAAGCTTATATCCAACAACATGGTACTGCTGGCAATTGGATAGCTCTTCCAAAGAAAATAGGCCTCAAAAGATGTGGAAAAAGTTGTCGTCTTCGATGGCTAAATTATCTTCGTCCAAATCTTAGACATGGGAGATTCTCCGAAGAAGAAGATAACATTATTTGCAGCCTCTATGTCAATATTGGAAGCAGGTGGTCAGTTATAGCAGCACAGTTACCAGGACGAACAGATAATGATATAAAGAACCACTGGAACACAAGGTTGAAGAAGAAACTTTTGACAAAGCCAACGAAAGAGCAACAATCTGAAACTCGCCAAGTTTTCATCCTAAATCAAAAGATCAAGAGAGAAAATGCTTCTTCTATGCAAGACTATAACCTCAAGGAAGTTGAGTTCTATGATAATAATCAACTGCAGCCAGTGAATGCTAACATTTACTTCCCACAAGATGAACTATATTATCCATCCACAATGAATAACGTAACTTCTGCAGAGTTGACCTGTGTGAACCAGCACCAAGAAGACTATGGATCAACTAGGATTAGTGGTAGCACGAACTTGAATTCAATAGAAAGCACTAGTTGGGGGGATATGAGGTCTTTGATTAACTCACCTTTGGTTTCTGATTATGAAGGTTGTCAACAAGATGTTAGTTTCGATGAGAGTATGTTCTATGGAATGATCCAATCGCAATGA 771 0.3904 MGRSPCCDKANVKRGPWSPEEDSKLKAYIQQHGTAGNWIALPKKIGLKRCGKSCRLRWLNYLRPNLRHGRFSEEEDNIICSLYVNIGSRWSVIAAQLPGRTDNDIKNHWNTRLKKKLLTKPTKEQQSETRQVFILNQKIKRENASSMQDYNLKEVEFYDNNQLQPVNANIYFPQDELYYPSTMNNVTSAELTCVNQHQEDYGSTRISGSTNLNSIESTSWGDMRSLINSPLVSDYEGCQQDVSFDESMFYGMIQSQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02755 256 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa4g02755 256 SMART sant 13 64 IPR001005 -
Vifa4g02755 256 SMART sant 67 115 IPR001005 -
Vifa4g02755 256 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa4g02755 256 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa4g02755 256 FunFam Transcription factor RAX3 7 68 - -
Vifa4g02755 256 Gene3D - 7 68 - -
Vifa4g02755 256 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa4g02755 256 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa4g02755 256 CDD SANT 16 62 IPR001005 -
Vifa4g02755 256 CDD SANT 70 110 IPR001005 -
Vifa4g02755 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa4g02755 256 Gene3D - 70 151 - -
Vifa4g02755 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa4g02755 256 PANTHER OS09G0431300 PROTEIN 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02755 Vifa-Chr4 861451655 861452610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02755 1 163 MYB Transcription Factor Family AT5G65790 68.293 4.94e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g02755 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02755 K09422 - gmx:100791406 296.975