Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02750 ATGAAGAGAATGGAGAATAATGATGATGCTGTTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCATTGTCACCTCAAATGAATGTTGGTGTTCCTTCACACCCTCATCATTCACAATCTGAAGTAGTTCCATTTCCTTCAAGCTTTTACCATAATGCTCCTCTTGGTAACTATTGTTTCTCTTATGGACTTGAACATGAAAATGCTGGTTTGTATTCATTGCTTCCTATTATGCCCCTCAAATCTGATGGATCTCTCTATGAAATGGAGTCACAAACACAAGCAATGGTAACTACTTCAGCACCAAAACTAGAGAATTTCTTAGGTAGTGAAGCTATGGGGACCCCTCATTATGCATGTAGTACTAGTACTGTCTCCGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAATCAAGTTCAAAACATGAACAACCAACAACAACAACAGTTTTCATCATATTACTCAAATTTGAGAAACCATGAGATGATGTTAGAAGGGTCAAAGCAAAGTCAAACTTCAAGTGGAAATTTCCATGTTTCAAATATGGGTGAGGATCATGGACTTGGATGTTTAAAGAGCTGGGTTTTAAGGAATTTTCCGGCTAGTCATGGACATGATCAGTCCAAGATGATTGTTCCGGTCGGTGTGGAGGAAAACGAAGGTGAATCGGGTTCTAATATCGGTTCAATGGCTTATGGTGATTTGCATTCTTTGAGCTTGTCGATGAGTCCTAGCTCGCAGTCTAGCTGTGTGACAACTTCACATGTTGTTATTGAAAATTCTGTTGCAATGGATACAAAGAAAAGAGGAAGTGAAAAGTTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATCGATGGACCGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAAGGCCAAAGCCGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAGATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGTAGTGGCTTCTCAAGAGGTGCTTCCATGTATAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTGGCTGGTAACAAAGATCTATATCTTGGGACCTTCAGTACTCAAGAGGAAGCGGCTGAGGCCTACGACATAGCTGCGATAAAATTCAGAGGAGCTAATGCAGTAACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCAAGTAGCAACCTTCTAAGCATTGAACTAGCTAGAAGGAACAAAGAGGTAGTAAATATTACTACAACTCAATATATTGATCCTCTCAACAACACTACTCAAGAAGCCATGCAGAAGAGTATGGTTCTCTATCAATCCTCTCAACAACAACTTCAACAGAATCAACCAAGAATTGAGAACGACAGAACTCATCAATCATTTTCCTCGGTGTCTTTGGATAACATGTTTCATCATGAAGTAGCCGATGAAGCGAGTAAGATGAGAACACATTTGTCAAATGCTTCTTCGTTGGCCACGAGTTTGAGTAGCTCAAGAGAAGATAGCCCTGATAGATCAAGCGTGAAGAATCTCTCGAGAATTCCTTCAACGTCATCAAAACTATTGGTTACTACTGCTTCAAATAGTAATATGAATTCTTGGGACCCTTCTCAACATCATCTTAGGCCTGCTCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCTTGGTCTGATGCATAG 1893 0.3925 MKRMENNDDAVVDINNENNWLGFSLSPQMNVGVPSHPHHSQSEVVPFPSSFYHNAPLGNYCFSYGLEHENAGLYSLLPIMPLKSDGSLYEMESQTQAMVTTSAPKLENFLGSEAMGTPHYACSTSTVSETMPLSLDSMFQNQVQNMNNQQQQQFSSYYSNLRNHEMMLEGSKQSQTSSGNFHVSNMGEDHGLGCLKSWVLRNFPASHGHDQSKMIVPVGVEENEGESGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSHVVIENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLEDYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIELARRNKEVVNITTTQYIDPLNNTTQEAMQKSMVLYQSSQQQLQQNQPRIENDRTHQSFSSVSLDNMFHHEVADEASKMRTHLSNASSLATSLSSSREDSPDRSSVKNLSRIPSTSSKLLVTTASNSNMNSWDPSQHHLRPALSLPQMPVFAAWSDA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02750 630 CDD AP2 297 361 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 Pfam AP2 domain 398 447 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 Pfam AP2 domain 298 353 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 SUPERFAMILY DNA-binding domain 396 455 IPR016177 GO:0003677
Vifa4g02750 630 ProSiteProfiles AP2/ERF domain profile. 397 455 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 MobiDBLite consensus disorder prediction 509 529 - -
Vifa4g02750 630 FunFam AP2-like ethylene-responsive transcription factor ANT 297 363 - -
Vifa4g02750 630 Gene3D AP2/ERF domain 397 457 IPR036955 GO:0003700|GO:0006355
Vifa4g02750 630 Gene3D AP2/ERF domain 297 363 IPR036955 GO:0003700|GO:0006355
Vifa4g02750 630 ProSiteProfiles AP2/ERF domain profile. 298 361 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 MobiDBLite consensus disorder prediction 552 584 - -
Vifa4g02750 630 PRINTS Ethylene responsive element binding protein signature 299 310 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 PRINTS Ethylene responsive element binding protein signature 437 457 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 SMART rav1_2 397 461 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 SMART rav1_2 298 367 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 SUPERFAMILY DNA-binding domain 297 362 IPR016177 GO:0003677
Vifa4g02750 630 CDD AP2 396 456 IPR001471 GO:0003700|GO:0006355
Vifa4g02750 630 FunFam AP2-like ethylene-responsive transcription factor 396 457 - -
Vifa4g02750 630 MobiDBLite consensus disorder prediction 553 572 - -
Vifa4g02750 630 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02750 Vifa-Chr4 857249811 857252780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02750 1 506 AP2-EREBP Transcription Factor Family AT4G37750 48.736 8.50e-151 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vifa4g02750 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02750 K09285 - gmx:100792451 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07465 1 1155782505 1155785500 Vifa4g02750 4 857249811 857252780 PCT