Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02749 ATGAAGAGAATGGAGAATAATGATGATGCTGTTGTTGACATTAACAATGAAAATAACTGGTTGGGTTTTTCATTGTCACCTCAAATGAATGTTGGTGTTCCTTCACACCCTCATCATTCACAATCTGAAGTAGTTCCATTTCCTTCAAGCTTTTACCATAATGCTCCTCTTGGTAACTATTGTTTCTCTTATGGACTTGAACATGAAAATGCTGGTTTGTATTCATTGCTTCCTATTATGCCCCTCAAATCTGATGGATCTCTCTATGAAATGGAGTCACAAACACAAGCAATGGTAACTACTTCAGCACCAAAACTAGAGAATTTCTTAGGTAGTGAAGCTATGGGGACCCCTCATTATGCATGTAGTACTAGTACTGTCTCCGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAATCAAGTTCAAAACATGAACAACCAACAACAACAACAGTTTTCATCATATTACTCAAATTTGAGAAACCATGAGATGATGTTAGAAGGGTCAAAGCAAAGTCAAACTTCAAGTGGAAATTTCCATGTTTCAAATATGGGTGAGGATCATGGACTTGGATGTTTAAAGAGCTGGGTTTTAAGGAATTTTCCGGCTAGTCATGGACATGATCAGTCCAAGATGATTGTTCCGGTCGGTGTGGAGGAAAACGAAGGTGAATCGGGTTCTAATATCGGTTCAATGGCTTATGGTGATTTGCATTCTTTGAGCTTGTCGATGAGTCCTAGCTCGCAGTCTAGCTGTGTGACAACTTCACATGTTGTTATTGAAAATTCTGTTGCAATGGATACAAAGAAAAGAGGAAGTGAAAAGTTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATCGATGGACCGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAAGGCCAAAGCCGAAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAGATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGTAGTGGCTTCTCAAGAGGTGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGATGGCAAGCTAGAATTGGTAGGGTGGCTGGTAACAAAGATCTATATCTTGGGACCTTCAGTACTCAAGAGGAAGCGGCTGAGGCCTACGACATAGCTGCGATAAAATTCAGAGGAGCTAATGCAGTAACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCAAGTAGCAACCTTCTAAGCATTGAACTAGCTAGAAGGAACAAAGAGGTAGTAAATATTACTACAACTCAATATATTGATCCTCTCAACAACACTACTCAAGAAGCCATGCAGAAGAGTATGGTTCTCTATCAATCCTCTCAACAACAACTTCAACAGAATCAACCAAGAATTGAGAACGACAGAACTCATCAATCATTTTCCTCGGTGTCTTTGGATAACATGTTTCATCATGAAGTAGCCGATGAAGCGAGTAAGATGAGAACACATTTGTCAAATGCTTCTTCGTTGGCCACGAGTTTGAGTAGCTCAAGAGAAGATAGCCCTGATAGATCAAGCGTGAAGAATCTCTCGAGAATTCCTTCAACGTCATCAAAACTATTGGTTACTACTGCTTCAAATAGTAATATGAATTCTTGGGACCCTTCTCAACATCATCTTAGGCCTGCTCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCTTGGTCTGATGCATAG 1896 0.3929 MKRMENNDDAVVDINNENNWLGFSLSPQMNVGVPSHPHHSQSEVVPFPSSFYHNAPLGNYCFSYGLEHENAGLYSLLPIMPLKSDGSLYEMESQTQAMVTTSAPKLENFLGSEAMGTPHYACSTSTVSETMPLSLDSMFQNQVQNMNNQQQQQFSSYYSNLRNHEMMLEGSKQSQTSSGNFHVSNMGEDHGLGCLKSWVLRNFPASHGHDQSKMIVPVGVEENEGESGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSHVVIENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLEDYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIELARRNKEVVNITTTQYIDPLNNTTQEAMQKSMVLYQSSQQQLQQNQPRIENDRTHQSFSSVSLDNMFHHEVADEASKMRTHLSNASSLATSLSSSREDSPDRSSVKNLSRIPSTSSKLLVTTASNSNMNSWDPSQHHLRPALSLPQMPVFAAWSDA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02749 631 CDD AP2 297 361 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 MobiDBLite consensus disorder prediction 510 530 - -
Vifa4g02749 631 Pfam AP2 domain 398 448 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 Pfam AP2 domain 298 353 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 CDD AP2 396 457 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 Gene3D AP2/ERF domain 397 458 IPR036955 GO:0003700|GO:0006355
Vifa4g02749 631 Gene3D AP2/ERF domain 297 363 IPR036955 GO:0003700|GO:0006355
Vifa4g02749 631 MobiDBLite consensus disorder prediction 553 585 - -
Vifa4g02749 631 FunFam AP2-like ethylene-responsive transcription factor ANT 297 363 - -
Vifa4g02749 631 ProSiteProfiles AP2/ERF domain profile. 397 456 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 ProSiteProfiles AP2/ERF domain profile. 298 361 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 SMART rav1_2 397 462 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 SMART rav1_2 298 367 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 MobiDBLite consensus disorder prediction 554 573 - -
Vifa4g02749 631 PRINTS Ethylene responsive element binding protein signature 438 458 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 PRINTS Ethylene responsive element binding protein signature 299 310 IPR001471 GO:0003700|GO:0006355
Vifa4g02749 631 SUPERFAMILY DNA-binding domain 297 362 IPR016177 GO:0003677
Vifa4g02749 631 SUPERFAMILY DNA-binding domain 396 456 IPR016177 GO:0003677
Vifa4g02749 631 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 544 - -
Vifa4g02749 631 FunFam AP2-like ethylene-responsive transcription factor 396 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02749 Vifa-Chr4 857249811 857252780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02749 1 507 AP2-EREBP Transcription Factor Family AT4G37750 48.649 4.80e-149 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa4g02749 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02749 K09285 - gmx:100792451 805.823