LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g02741	ATGATCTCCACCCTCTCTCCCTCCGACTCTTTTCTCGACAACCCATTTTCCACCTTCTCCGGCAGTTTCCCGCCTTGGGATTTCCATGACCTAATTTCCGACGACCTCGAACCCACCACTCCCCTACCCATCACTTCAACCTCCGGTTCAGACGAACCGAACCAAACCCACGAGAAATGTAAACCGGACTCAGACGAACCGAACCAAACCCACGAGAAACGTAAACCGGACTCAGACGAACCGAACCACCGGGCCATAGTCATAGACGAGCGAAAGCGGAGACGCATGTTATCGAACCGGGAATCCGCCCGAAGATCACGGATGCGTAAACAACGTCACGTGGAGAATCTAAGGAACCAGTTGAACAAGTGTAGAATCGAAAACAAGGAACTCAAAAACCGGTTGCAATTCATTTTGTTTCACTATAACAGTTTACGAACCGAAAACGAATGGCTCCGGTCCGAGCGAACCGTGCTGAACCAAAGAATCAACTACTATACTCAAATTTTGGCTTACCAACAATTTCAACCTTTCTCCACTGCATGGACATGTAACACTACTACGGTGTAA	570	0.486	MISTLSPSDSFLDNPFSTFSGSFPPWDFHDLISDDLEPTTPLPITSTSGSDEPNQTHEKCKPDSDEPNQTHEKRKPDSDEPNHRAIVIDERKRRRMLSNRESARRSRMRKQRHVENLRNQLNKCRIENKELKNRLQFILFHYNSLRTENEWLRSERTVLNQRINYYTQILAYQQFQPFSTAWTCNTTTV	189

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g02741	189	SUPERFAMILY	Leucine zipper domain	91	139	IPR046347	GO:0003700\|GO:0006355
	Vifa4g02741	189	Coils	Coil	100	134	-	-
	Vifa4g02741	189	PANTHER	BZIP TRANSCRIPTION FACTOR 44	46	173	-	-
	Vifa4g02741	189	Pfam	bZIP transcription factor	91	149	IPR004827	GO:0003700\|GO:0006355
	Vifa4g02741	189	Gene3D	-	89	139	-	-
	Vifa4g02741	189	CDD	bZIP_plant_GBF1	92	143	IPR045314	GO:0003700\|GO:0006355
	Vifa4g02741	189	MobiDBLite	consensus disorder prediction	54	104	-	-
	Vifa4g02741	189	FunFam	BZIP transcription factor	89	139	-	-
	Vifa4g02741	189	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	89	152	IPR004827	GO:0003700\|GO:0006355
	Vifa4g02741	189	MobiDBLite	consensus disorder prediction	39	53	-	-
	Vifa4g02741	189	SMART	brlzneu	87	151	IPR004827	GO:0003700\|GO:0006355
	Vifa4g02741	189	MobiDBLite	consensus disorder prediction	32	112	-	-
	Vifa4g02741	189	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	94	109	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g02741	Vifa-Chr4	853997022	853997591	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g02741	1	176	bZIP Transcription Factor Family	AT2G22850	36.279	8.94e-32	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Vifa4g02741		bZIP_1	2.1e-07	CL0018