Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02736 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTAAAAGCTGGAGTACTCAAACACGGGTCTGGAAAATGGCGCACTATACTTACTGATCCTGAGTTTTGTACCATTTTGCGCACTCGTTCAAATGTAGATCTCAAGGATAAGTGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTTCCAGCCCCCAAAATTGACAATAATCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACATTCTTGATATTAAGCCTCTAACAATTTCTAGTGGAGCATTGCCATCTTCTAATTCAAAAGAACAAGTATCAAGGTTGGGGGTTAATCATGTACTAGAGGCTAATGTCAATATGAAGGAGCCAAAGGGTTCTAACAAGGCTGCTATTGCTTCTTACATAGAGGAAAAGCATAAGTACAAAATTATGCCAAATCCAAGAGTCTCTGAGAAAAGAAGTCCTTCCTTGATGCCCATGGAAGCTAGGCCCAAAGATTCTCTAGAAGTGGAGAAGAGTGGTGAGGTCAACATCCTTTCAAAATCTCAAATTGACGCAGAGCTATCAAAAGTGACGAGCATGACAGCTCAAGAGGCGGCCGCTGCAGCTGCAAAAGCAGTTGCAGAGGCCGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGAGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCAAAGAAGGCGCTTAAAAGCAAAATGCTTCATATTTGGTAG 804 0.444 MGAPKQKWTAEEEAALKAGVLKHGSGKWRTILTDPEFCTILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPAPKIDNNQLALSKVVQREDILDIKPLTISSGALPSSNSKEQVSRLGVNHVLEANVNMKEPKGSNKAAIASYIEEKHKYKIMPNPRVSEKRSPSLMPMEARPKDSLEVEKSGEVNILSKSQIDAELSKVTSMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAKKALKSKMLHIW 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02736 267 PANTHER SINGLE MYB HISTONE 4 1 262 IPR044597 GO:0003691
Vifa4g02736 267 SUPERFAMILY "Winged helix" DNA-binding domain 125 156 IPR036390 -
Vifa4g02736 267 Coils Coil 214 251 - -
Vifa4g02736 267 MobiDBLite consensus disorder prediction 161 185 - -
Vifa4g02736 267 FunFam Telomere repeat-binding factor 1 2 58 - -
Vifa4g02736 267 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vifa4g02736 267 SMART sant 4 59 IPR001005 -
Vifa4g02736 267 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Vifa4g02736 267 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vifa4g02736 267 CDD SANT_TRF 6 57 - -
Vifa4g02736 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vifa4g02736 267 Gene3D - 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02736 Vifa-Chr4 852465695 852471056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02736 1 267 Single Myb Histone (SMH) Gene Family AT5G67580 49.502 1.10e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g02736 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02736 K09422 - gmx:100779583 297.745