Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02727 ATGGATACATTGTTTAGGCTAGTCAATTTCCAACAACAACAACATCAATATCAACCCGATCCTTCCCTCAACTGCACCACCACCTTAACAACATCAAGCAGCTCTAGATCCTCAAGACAAACAACAACAACAACAACAAACTATCATTATTATTACCAACATCAAGAAGAAGACGAAGAATGCTTCAACAACTTCTATTACATGGATCATAACAATACCAATGATGAAGACTTATCTTCATCTTCTTCTAAACAAAATTACTACAATTATCCTTATGATCAACAACAACCTCACCACCACCATCATCATGATGTATCCAATACTACAATCACTACTTCTTCTCCAAACACATACACAAACACCAACTTTAATACTATTAACACCCCCACCACCACTGATATTAACTACTCATTCTCACCCACTCAAGATTACTTCAACTTCGATTTCTCCGGTAACTCATGGTCGCAAAACATTCTTCTTGAAACAGCACGTGCCATTTCCGACAACAAAACTAACCGAATCCAACAACTCATATGGATGCTCAACGAGCTTAGTTCACCTTACGGCGATACAGATCAAAAGCTTTCAGCTTATTTCCTCCAAGCTTTGTTCAGCCGCATGAACAACACAGGTAACAGAACCTACAAAACCTTAACATTCGCGTCGGAGAAAACATGTTCCTTTGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTCGGACACGTGGCGTCCAATGGTGCTATCTTAGAAGCATTAGAAGGTAGCCCTAAACTTCACATAATTGATATCAGCAACACTTATTGCACTCAATGGCCAACGCTTCTCGAAGCTTTGGCCACTCGCTCCGACGATACACCGCACCTCCGTCTAACCACTGTAGTCACAGCCGTCAGCGGTGGTTCCGTTCAGAAAGTCATGAAGGAAATTGGAGCAAGGATGGAGAAATTCGCGAGGCTTATGGGAGTTCCGTTTAAGTTCAAAATCATTTTCAGTGATCTAAGGGAGTTGAATTTAAGAGATTTAGATATTAAAGAGGATGAAGCTTTGGCTATAAATTGTGTTAACTCTTTGCATGCAATTCCCGGCGCCGGGAACCACCGTGACGGTTTGATTAATTTTCTCCGTGGATTAGAGCCTAGGGTTATGACGGTGGTTGAAGAGGAAGCTGATTTAGAACACTGTTTTGGCTCAGATTTCGTGGAAGGTTTTGGAGAGTGTTTGAGATGGTTTAGAGTTTATTTTGAAGCGCTTGAAGAGAGTTTTTCGAGAACGAGTTGTGAGAGGTTGATGCTTGAAAGAGAAGCAGGGAGAGGTATTGTTGATTTGGTTGCTTGTGATGCTTTTGAGTCAGTGGAAAGACGCGAAACTGCGGCGCGGTGGAGGAGGCGTTTGCAACGCGGAGGGTTTAATACGGCGGCGTTTAGCGATGAGGTTTGTGATGATGTGAGAGCGTTGTTGAGGAGGTATAGAGAAGGGTGGTCGTTGACGCCGTGCTCCGCCGCCGATGACGGAATATTTTTGTCGTGGAAGGATAAGCCAGTGGTGTGGGCCAGTGTATGGAGGCCTTGA 1593 0.4325 MDTLFRLVNFQQQQHQYQPDPSLNCTTTLTTSSSSRSSRQTTTTTTNYHYYYQHQEEDEECFNNFYYMDHNNTNDEDLSSSSSKQNYYNYPYDQQQPHHHHHHDVSNTTITTSSPNTYTNTNFNTINTPTTTDINYSFSPTQDYFNFDFSGNSWSQNILLETARAISDNKTNRIQQLIWMLNELSSPYGDTDQKLSAYFLQALFSRMNNTGNRTYKTLTFASEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGSPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAVSGGSVQKVMKEIGARMEKFARLMGVPFKFKIIFSDLRELNLRDLDIKEDEALAINCVNSLHAIPGAGNHRDGLINFLRGLEPRVMTVVEEEADLEHCFGSDFVEGFGECLRWFRVYFEALEESFSRTSCERLMLEREAGRGIVDLVACDAFESVERRETAARWRRRLQRGGFNTAAFSDEVCDDVRALLRRYREGWSLTPCSAADDGIFLSWKDKPVVWASVWRP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02727 530 ProSiteProfiles GRAS family profile. 146 529 IPR005202 -
Vifa4g02727 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 522 IPR005202 -
Vifa4g02727 530 MobiDBLite consensus disorder prediction 92 113 - -
Vifa4g02727 530 Pfam GRAS domain family 157 529 IPR005202 -
Vifa4g02727 530 MobiDBLite consensus disorder prediction 15 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02727 Vifa-Chr4 848031637 848033229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02727 1 530 GRAS Transcription Factor Family AT4G37650 54.973 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa4g02727 GRAS 5e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02727 - - tpra:123919748 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02727 4 848031637 848033229 Vifa4g02727 4 848031637 848033229 ECH
Vifa1g07429 1 1147457892 1147459352 Vifa4g02727 4 848031637 848033229 PCT