Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02723 ATGGAGAGTTATTTAAATGAGAATTTTGGAGGTGTAAAGTCCAAGAACTCCGACGAAGAATCTCTTGGAAAATGGAGGAAACTTTGTGGCGTTGTAAAGAATCCCAAAAGACGCTTTCGTTTCACTGCCAACATCTCCAAACGTTACGAAGCTGCTGCTATGCGCCGCACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCGAAAGCCGCGTTTCAATTTATTCAAGGTGTTCAACCAAGCGACTACGTTCTACCTGAGGATGTTAAGGCTGCAGGTTTCCAAATCTGTGCTGAAGAATTGGGATCTATTGTTGAAGGCCACGACGTAAAGAAGCTGAAGTTTCATGGTGGAGTTGATGGCATTGCAGAAAAGCTTTCGACGTCAACAACCCAAGGACTCGGTGGCGATTCTGAGTCGCGGAATAGAAGGCAAGAGCTATTCGGGATCAATAAATTTGCTGAAAGCGAAATGCGAAGCTTCTGGGTTTATGTTTATGAAGCCCTTCAAGACATGACCCTCATGATCCTTGGAGTGTGTGCTTTCGTGTCTTTGATAGTTGGCGTATTGACCGAAGGATGGCCGAAAGGAGCTCATGATGGTCTTGGAATAGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACGAGTGATTATCGGCAATCGTTACAGTTTAAGGATTTAGATAAGGAGAAGAAGAAGATTTCTATTCAAGTTACGAGAAACGGTTATAGGCAGAAAATGTCGATATACAATTTACTTCCTGGTGATATTGTTCATCTTAACATTGGAGACCAAGTACCTGCAGATGGACTATTTGTTTCAGGATTTTCAGTGTTGATCGATGAATCAAGTTTAACCGGCGAGAGTGAGCCAATAATGGTTACTTCCCAAAATCCATTTCTTCTCTCAGGAACAAAAGTCCAAGATGGATCATGCACTATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAATTGATGGCAACTCTTAGTGAAGGCGGAGACGATGAAACACCATTGCAGGTGAAACTTAATGGAGTAGCAACCATTATTGGAAAGATAGGACTAGTCTTTGCAGTGATTACCTTTACAGTTTTGGTTAAAGGACACTTGGGCCGCAAAATCCGCGAAGGAAGATTCTGGAGGTGGGCTGGTGATGATGCAATGGAGATGTTGGAATTCTTTGCTATTGCGGTTACTATTGTTGTCGTTGCCGTTCCAGAGGGTTTACCATTAGCTGTGACATTGAGTCTTGCATTTGCAATGAAGAAGATGATGAATGATAAAGCCTTGGTTAGGCATTTAGCAGCATGTGAAACTATGGGATCAGCCACAACTATATGCAGTGACAAAACCGGTACATTAACAACCAACCGAATGACGGTTGTGAAAACGTGCATTTGTATGAATAGCAATGATGTGAATAATCATGATTCTAGTCTTTCGTCTGAGCTACCGGACTCTTCTGCAAAACTGCTGCTACAATCGATATTTAATAACACCGGAGGAGAGGTTGTGTATAACAAAAAAGGCAAACGCGAGATATTGGGGACGCCCACCGAATCAGCAATATTGGAATTTGGTTTGTCACTAGGTGGTGATTCTAAGGCTGAGAGAAAAGCTTGCAAAATTATTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGAGTAGTTGTGGAGCTACCTGATGGAAGTTTAAGAGCTCATTGCAAAGGTGCTTCTGAAATAATTCTAGCTGCTTGTGACAAAGTTATTGGTTCGAACGGCGAAGTTGTCGGGCTTGATGGAGAATCAAGTAATTATCTTAACAATATTATTAACCAGTTTGCTAATGAGGCACTTAGAACTCTTTGTCTTGCCTATATGGAATTGGAAAAAGGGTTTGCTGCCGATGATCCGATTCCTGCTTCTGGTTATACTTGTATTGGAATTGTTGGTATCAAAGATCCGGTTCGCCCTGGAGTTAAGGAGTCTGTCGCAGTGTGTCGTTCGGCTGGAATAGTAGTGAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGCGGAATTTTAACAGATGATGGCATAGCTATTGAAGGTCCTGACTTCAGAGAGAAAACTCAAGAGGAGTTGTTTGAACTTATTCCTAAAATTCAGGTTATGGCTAGATCATCACCTTTAGACAAACATACATTGGTGAGACAGCTGCGTACAACATTCGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCTGCACTTCATGAAGCCGACATCGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCCGATGTTATAATTCTTGATGATAATTTCTCCACGATAGTCACAGTGGCGAGATGGGGACGTTCCGTTTACATCAATATCCAGAAATTCGTACAGTTTCAGCTTACTGTAAATGTGGTTGCATTACTAGTGAACTTCTCATCCGCCTGCATGACAGGCAGTGCACCACTCACAGCAGTTCAACTTTTGTGGGTGAATATGATAATGGACACTTTAGGAGCACTTGCACTTGCAACTGAACCTCCAACCGACGATTTGATGAAGCGTGAACCGGTGGGAAGGAAAGGTGATTTCATCAGTAGCGTCATGTGGAGAAATATCTTAGGACAAGCATTGTATCAGTTTGTGGTAATATGGTTTCTTCAGGCAGTAGGAAAATGGATCTTTTTCCTCAGGGGCCCCAATGCTGATATAGTCTTAAACACACTCATTTTTAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCTCGTGAGATGGAGGAAATAGATGTTTTTAAGGGCATATGGGATAATCACGTGTTCGTGGCAGTCATCAGTGCAACTGTAGTCTTCCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAATACAACACCTTTATCTCTGGTACAATGGATATTTTGCTTAGGGGCTGGATATATGGGCTTGCCAATCGCAATTCGCTTAAAGCAGATACAAGTCTGA 3045 0.4204 MESYLNENFGGVKSKNSDEESLGKWRKLCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYVLPEDVKAAGFQICAEELGSIVEGHDVKKLKFHGGVDGIAEKLSTSTTQGLGGDSESRNRRQELFGINKFAESEMRSFWVYVYEALQDMTLMILGVCAFVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGESEPIMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAVITFTVLVKGHLGRKIREGRFWRWAGDDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSNDVNNHDSSLSSELPDSSAKLLLQSIFNNTGGEVVYNKKGKREILGTPTESAILEFGLSLGGDSKAERKACKIIKVEPFNSEKKRMGVVVELPDGSLRAHCKGASEIILAACDKVIGSNGEVVGLDGESSNYLNNIINQFANEALRTLCLAYMELEKGFAADDPIPASGYTCIGIVGIKDPVRPGVKESVAVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVRQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVARWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKREPVGRKGDFISSVMWRNILGQALYQFVVIWFLQAVGKWIFFLRGPNADIVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFVAVISATVVFQIIIVEYLGTFANTTPLSLVQWIFCLGAGYMGLPIAIRLKQIQV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02723 1014 Gene3D - 168 999 - -
Vifa4g02723 1014 Gene3D - 17 77 - -
Vifa4g02723 1014 Gene3D - 450 798 IPR023214 -
Vifa4g02723 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1012 IPR023298 -
Vifa4g02723 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Vifa4g02723 1014 SFLD p-type atpase 435 805 IPR044492 -
Vifa4g02723 1014 Pfam haloacid dehalogenase-like hydrolase 649 767 - -
Vifa4g02723 1014 Pfam Cation transporting ATPase, C-terminus 838 1007 IPR006068 -
Vifa4g02723 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Vifa4g02723 1014 Gene3D - 138 336 - -
Vifa4g02723 1014 Gene3D - 463 657 IPR023299 GO:0000166
Vifa4g02723 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vifa4g02723 1014 FunFam Calcium-transporting ATPase 17 77 - -
Vifa4g02723 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Vifa4g02723 1014 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa4g02723 1014 PANTHER CATION TRANSPORTING ATPASE 65 1013 - -
Vifa4g02723 1014 FunFam Calcium-transporting ATPase 770 1014 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Vifa4g02723 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Vifa4g02723 1014 FunFam Calcium-transporting ATPase 646 798 - -
Vifa4g02723 1014 SUPERFAMILY HAD-like 451 858 IPR036412 -
Vifa4g02723 1014 CDD P-type_ATPase_Ca_PMCA-like 143 886 - -
Vifa4g02723 1014 NCBIfam HAD-IC family P-type ATPase 394 481 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 NCBIfam HAD-IC family P-type ATPase 724 837 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 NCBIfam HAD-IC family P-type ATPase 545 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02723 1014 FunFam Calcium-transporting ATPase 463 657 - -
Vifa4g02723 1014 FunFam Calcium-transporting ATPase 216 336 - -
Vifa4g02723 1014 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Vifa4g02723 1014 Pfam E1-E2 ATPase 237 431 - -
Vifa4g02723 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Vifa4g02723 1014 SFLD Haloacid Dehalogenase 435 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02723 Vifa-Chr4 846542705 846546507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02723 1 1014 Primary Pumps ATPases AT4G37640 81.970 0.0 1703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02723 K01537 - gmx:100776926 1831.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02723 4 846542705 846546507 Vifa4g02723 4 846542705 846546507 ECH
Vifa1g07419 1 1144578493 1144583292 Vifa4g02723 4 846542705 846546507 PCT