Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02718 ATGGCCGTAAGACAATTCCAATTCAACTTCTCGCGTGATAGATTGGCGTTTCTCTTTCGAACATCTCAATCTCATTCCTTCTTTCGTAATAATAATAAATCCCCCCAATCTCTCATCTCTTTCCCCCCCTCTTCCTTCCTCCGCCGCCTAGCTGCCTCCGCAGCAACTCCATCGCCGCCTCAAGACCATCGGCGCCGTCCGCGGCTTCCTCCTCCCGACGACATGGCGCAGAAGTTCGGAAAATCCACTCGCCGCCCCGGCGCTTCCTCCAAGGCCAGGGTTTATTCCGATATCAACGTGGTTCGACCCAAGGAATATTGGGACTATGAAACCCTCACCGTTCAGTGGGGAGAGCAGGATGATTATGAGGTGGTGAGGAAGGTTGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGGGTTCACTGTACTGATAATGAGAAATGTGTTATTAAGATCCTCAAACCTGTGAAGAAGAAGAAGATCAAGAGAGAAATCAAAATATTACAGAATCTTTGCGGAGGGCCCAATATTGTTAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCAAGTCTCATATTTGAATATGTCAACAACACTGATTTTAAAGTTCTTTATCCTTTGTTGTCAGACTATGACATACGATACTATATCTATGAACTTCTAAAGGCCTTGGATTACTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCACAATGTAATGATTGACCATGCTCAGCGTAAGCTTCGCCTTATTGATTGGGGGCTTGCAGAATTCTATCATCCTGGGAAAGAATATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCGGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCTGGGATTATATTCCGGAAGGAGCCGTTCTTTTATGGACACGATAACTATGATCAACTGGTCAAAATAGCTAGGGTACTTGGGACAGATGAATTAAATGCATATTTGAATAAATATCGCATTGAGTTGGACCCACATCTTGCAGCACTTATTGGGAGGCACAGCCGAAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAACACTTGACTGTTCCCGAGGCTGTTGACTTTGTTGACAAGTTACTTCGATACGATCACCAAGAACGACCCACTGCAAAGGAAGCCATGGCTCATCCATACTTCAATCCCATTAGAAGTGCAGAAAGTAGTAGAGCTCGCGCACATTGA 1266 0.4463 MAVRQFQFNFSRDRLAFLFRTSQSHSFFRNNNKSPQSLISFPPSSFLRRLAASAATPSPPQDHRRRPRLPPPDDMAQKFGKSTRRPGASSKARVYSDINVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPLLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHAQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGIIFRKEPFFYGHDNYDQLVKIARVLGTDELNAYLNKYRIELDPHLAALIGRHSRKPWQRFINVENQHLTVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRSAESSRARAH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02718 421 SUPERFAMILY Protein kinase-like (PK-like) 93 410 IPR011009 -
Vifa4g02718 421 Pfam Protein kinase domain 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02718 421 SMART serkin_6 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02718 421 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02718 421 FunFam Casein kinase II subunit alpha 199 410 - -
Vifa4g02718 421 MobiDBLite consensus disorder prediction 53 90 - -
Vifa4g02718 421 Gene3D Transferase(Phosphotransferase) domain 1 199 407 - -
Vifa4g02718 421 FunFam Casein kinase II subunit alpha 108 198 - -
Vifa4g02718 421 Gene3D Phosphorylase Kinase; domain 1 122 198 - -
Vifa4g02718 421 CDD STKc_CK2_alpha 103 407 IPR045216 GO:0004674|GO:0006468
Vifa4g02718 421 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Vifa4g02718 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vifa4g02718 421 PANTHER CASEIN KINASE II SUBUNIT ALPHA 76 416 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02718 Vifa-Chr4 843057763 843064297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02718 120 410 Core Cell Cycle Gene Families AT1G20930 30.032 1.27e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vifa4g02718 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02718 K03097 - gmx:100776388 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02718 4 843057763 843064297 Vifa4g02718 4 843057763 843064297 ECH