Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02715 ATGAGTTGCAATGGCTGCCGCGTTCTTCGAAAGGGTTGCAGTGAGTCATGTATTTTGCGACCTTGTTTGCAGTGGATTGAAACTCCAGAAGCTCAAGGTCACGCCACTGTTTTCGTAGCCAAATTCTTCGGCCGCGCTGGTCTTATGAACTTCATTTCCAACGTCCCTGAACCACAAAGACCAGCTTTGTTTCAGTCTTTACTATTTGAAGCGTGTGGAAGAACCGTTAATCCTGTAAACGGTGCCGTGGGACTTCTCTGGACTGGAAACTGGCACGTGTGTCAGGCGGCGGTTGAGACTGTTCTTCGCGGCGGCACGCTTAGGCCTTTACCGGAGATGATAGGTATGAACGCGCCTCCTATCGCGTCTGATGAAGCATCAGAGGCCGAAGACGCTGGGACAGACGCCATTTGGAGGATGCGAGATCCGAATCCAAATTTTCGGTTACCGACCTCGAGATCTAACAATAAGGTTTCTTCCGGTGTGAAACGCAGGCGATCGGAGGATTTTGTGAAGATTCCGGCGGCGATTAACCTTGAGCTACGATTGACGCCGAAAGGAGTGGAGAACCGCCAGCCTGGATCGCCGTCGTTGACGTCGGAGGAATCCGTGACTACGACGGCGTGCTTGGAGACTGGGATCGGTGAACAGTGGACTCACGGTGGTGATAGGAAAGTTCTCAACCTTTTCATATGA 696 0.5187 MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMNFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPEMIGMNAPPIASDEASEAEDAGTDAIWRMRDPNPNFRLPTSRSNNKVSSGVKRRRSEDFVKIPAAINLELRLTPKGVENRQPGSPSLTSEESVTTTACLETGIGEQWTHGGDRKVLNLFI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02715 231 MobiDBLite consensus disorder prediction 143 163 - -
Vifa4g02715 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vifa4g02715 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 211 - -
Vifa4g02715 231 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02715 Vifa-Chr4 841082404 841083188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02715 1 231 AS2 family AT4G37540 57.143 2.51e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g02715 LOB 6.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02715 - - gmx:100802764 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07395 1 1138426909 1138427666 Vifa4g02715 4 841082404 841083188 ECH
Vifa4g02715 4 841082404 841083188 Vifa4g02715 4 841082404 841083188 ECH
Vifa4g02715 4 841082404 841083188 Vifa1g07395 1 1138426909 1138427666 PCT