Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02703 ATGCGCACGAATCTCCAGCAAACACTACTCCTCCGCTTGTTGCTAGTGTGCACCATTCTCACCTTACGTACGCCGGTTGCGCAACCTCCTAACGTGCGCATCCCTAACCAATCCATCGAATCTAATAGCACCACTATCGTTTATCATCACCACCACAAAGCTCAGATCTCAGATTCCAATCCCAACGAAATGTCCAAAGCTCGCGTCTACACCGATGTCAATGTTATTCGCCCCAAAGAGTATTGGGATTATGAATCTCTCACTGTTCAATGGGGTGATCAAGATGATTACGAGGTTGTAAGGAAAGTGGGAAGGGGGAAATATAGTGAGGTGTTTGAAGGCGTGAATGTGAACAGCAATGAGCGATGTGTTATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGACATTGTCAGAGATCAGCACTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGACTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCTTTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAACCACACAATGTTATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCACCCTGGAAAGGAATATAATGTCCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGATTACTCATTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATTTTTCGGAAGGAACCGTTCTTTTATGGTCATGATAACCATGACCAGCTTGTGAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAGTGCATATCTGAATAAGTATCATCTTGAGCTAGATCCTCAACTTGATGCACTGGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATCAATGCGGACAATCAGCATCTTGTATCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGTTATGACCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCCTATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACATAG 1188 0.4217 MRTNLQQTLLLRLLLVCTILTLRTPVAQPPNVRIPNQSIESNSTTIVYHHHHKAQISDSNPNEMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGVNVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELSAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02703 395 FunFam Casein kinase II subunit alpha 174 385 - -
Vifa4g02703 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vifa4g02703 395 ProSiteProfiles Protein kinase domain profile. 97 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02703 395 SUPERFAMILY Protein kinase-like (PK-like) 65 386 IPR011009 -
Vifa4g02703 395 SMART serkin_6 97 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02703 395 PANTHER CASEIN KINASE II SUBUNIT ALPHA 45 391 IPR045216 GO:0004674|GO:0006468
Vifa4g02703 395 Gene3D Phosphorylase Kinase; domain 1 97 173 - -
Vifa4g02703 395 FunFam Casein kinase II subunit alpha 83 173 - -
Vifa4g02703 395 Gene3D Transferase(Phosphotransferase) domain 1 174 382 - -
Vifa4g02703 395 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Vifa4g02703 395 Pfam Protein kinase domain 97 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02703 395 CDD STKc_CK2_alpha 78 382 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02703 Vifa-Chr4 834258980 834264297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02703 95 382 Core Cell Cycle Gene Families AT1G76540 29.450 5.94e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vifa4g02703 Pkinase 4.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02703 K03097 - gmx:100820471 711.064