Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02685 ATGTATCCAAACCCATATGAACAATCACAACCACTGTTATTGAAAGAACAAGAAGATGGAAAGCCACGAGAAACAGCATACGAATCGTCAGAAAAGATAGTAGTGGTTGGAATCGACGAATCAGTAAACTGTGGCACTGAAGTGCCACCATTTTCATGGAAGAAGCTATGGCTATTCACAGGTCCTGGATTTTTAATGAGTATAGGGTTTTTGGATCCAGGGAACATAGAAGGAGACCTTCAAGCTGGTGCAATTGCTGGGTATTCTTTGTTGTGGCTTCTTATGTGGGCTACGGCAATGGGGCTTTTGATTCAGCTTTTGTCAGCGAGGCTTGGTGTAGCTACAGGGAAGCATTTGGCTGAGCTTTGTAGGGAGGAGTATCCTAGGTGGGCTAGGAATGTGCTTTGGGTTATGGCTGAGTTTGCTCTGATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTGTTCCTCTTTGGGGTGGTGTTGTTATTACTGCTCTTGATTGTTTTATTCTTCTCTTTCTTGAGAACTATGGTGTTAGATCATTGGAAGCTTTTTTTGCTGTTCTCATTGGCATAATGGCACTATCTTTTGCTTGGATGTTTGGTGAGGCAAAGCCAAGTGGCGAGGAACTTTTAGTTGGCATATTGGTTCCAAGAATAAGTTCCAGAACCATACAACAAGCTGTTGGAGTTGTAGGCTGTCTTATAATGCCTCACAACGTATTCTTGCATTCTGCCCTTGTTCAATCGCGGAAAGTTGATCACACCAACAAAGGCAGAGTTCAAGAAGCACTTAACTATTACTCAATAGAGTCTACACTTGCCTTGATTGTCTCCTTTGTCATTAACATACTCGTAACCTCCGTGTTTGCAAAAGGATTTTATGGTTCCGAAATGGCAAATAGTATCGGCCTTGAAAACGCAGGACAGTATCTTCAACAAACTTATGGAGGCGGAGTTCTTCCGATATTGTACATATGGGGTATCGGGTTGTTAGCAGCCGGTCAAAGTAGTACTATAACAGGTACTTACGCGGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGATGAAGAAATGGATGCGGGCGATGATCACTCGAAGTTCTGCAATAGTTCCAACCATGATAGTTGCTCTTTGGTTTGATACTAGAGAGGATTCACTAGATGTTCTGAATGAGTGGCTTAATGTACTTCAGTCTGTTCAAATTCCATTTGCACTTATTCCTTTGCTTTGTATGGTGTCAAAGGAGCAAATCATGGGCACTTTCAAAATTGGCACTGTCCTCAAGGTGATTTCTTGGTGTGTGGCTGCCCTTGTGACAGTGATTAACGGTTATTTGTTGCTGGAATTCTTCTCATCTGAAGTGAATGGACTAATAGTTGGTGCTATAGTTTGTGTAGTAACTGCTGCATATGTTGCATTCATCGTATATCTTATTTTGCGCGCCACAGCATTCTTTAATATTCTCTGTATGACAAAGCCTAACTCGGCCGCGGCCAAAGGTGATACTTCTCTTGGATAG 1560 0.4179 MYPNPYEQSQPLLLKEQEDGKPRETAYESSEKIVVVGIDESVNCGTEVPPFSWKKLWLFTGPGFLMSIGFLDPGNIEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPRWARNVLWVMAEFALIGSDIQEVIGSAIAIRILSNGVVPLWGGVVITALDCFILLFLENYGVRSLEAFFAVLIGIMALSFAWMFGEAKPSGEELLVGILVPRISSRTIQQAVGVVGCLIMPHNVFLHSALVQSRKVDHTNKGRVQEALNYYSIESTLALIVSFVINILVTSVFAKGFYGSEMANSIGLENAGQYLQQTYGGGVLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRMKKWMRAMITRSSAIVPTMIVALWFDTREDSLDVLNEWLNVLQSVQIPFALIPLLCMVSKEQIMGTFKIGTVLKVISWCVAALVTVINGYLLLEFFSSEVNGLIVGAIVCVVTAAYVAFIVYLILRATAFFNILCMTKPNSAAAKGDTSLG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02685 519 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 Hamap Divalent metal cation transporter MntH [mntH]. 41 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 Pfam Natural resistance-associated macrophage protein 76 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g02685 519 NCBIfam Nramp family divalent metal transporter 61 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02685 Vifa-Chr4 830924559 830926523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02685 24 492 Inorganic Solute Cotransporters AT1G47240 77.282 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02685 K21398 - gmx:100812381 824.313