Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02672 ATGGCAACTCAACACTCTCTACTTTTACTTACTTTTCTTCTTCAATTCTCATCACTGCAATTTCCCTCACTCGGATTATACAATCTCCAAAAGACATACTTCATCAACTGTGGATCAGATACCGACGTTGAACAAAATAACAATAATTATATTGGTGAATCAGATCCTAATTACCCTGAAAAATTATTCGGCATAAGCTCCACAATGACTTCTCAATCATCTGTACCTTCAACTCTGTACCAAACAGCAAGAATTTTCAATTCTGAATCTTCCTACGAATTCACTACCATCCCAAACAACACTTACATGGTACGTTTACATTTCCTTTCATTCTCTTCACCAACTAACCTTTCCTCTGCTAAATTCAGCGTTTCTGTTCCCGGTTTCCATCTGTTACAAAATTTCGACGCCAAAAACACCACAAATTCTCCTTTAATAAAAGAGTATTTTGTCAAAATCATCCGAAAAAGATTCAAAATCATTTTCACACCTCAAAACTCATCATTCGCGTTTGTTAATGCAATAGAACTCTTTACGCTCCCTATTCATTTTATCCCCGATTTAGTTGCACGTTTCAGTTACTTGAGTTCTACCGGTCGAGGCCTATCTACTTATACTGGTGATTTACTCTCTCGAGCGCTGGAAACTAAACACCGTCTTAACGTTGGTGGCGAAACTGTCACTAGATTAACCGATGACTTATCCAGAAATTGGTTACCTGATGACAATTATATAACTACTCCACAGAATGCTAAGAATATTTCATTTAGCGGTAATATTAAACGCACTGCGAATGATGAATCTGATGGTCCAAATTCAAATCAATATATTGCTCCAGATACTGTTTATCAATTTGCCAAAGAGACTAAAAATGGTTCTAACGGTTTAAGCATAAGTTGGAGTTTTCCTGTGGACAAGAATATTGATCATTTCATTAGGCTTCACTTTTGTGACTTTTCAAATCTACAGCCTGGTCTTACCACTTTCTTTCTCTACTTTTATGACACATATGTTCAAAATGTAAATGATGATGGCACAGGTATATCACTTCAGTTGAATGATCCTTATTATTATGATTTTGTGGTTCGCTCCGATGCCTCTGGCATATTCAAGGTTACTCTAACACCTAATGTGACTTTTAGTCTACCGAACGCATTCTTAAACGGCCTAGAACTAATGAAACTGATTGAACCATCGGGTTTAGTTCCCTTTGATGATTTGGATTCAAATTCGAAGGTTAATCTTCCTGTGGTGGTGGGTTTGGCCGTGGGAGGTTTAGTTCTGGTTTTTGTTGTGGTGGTTGTGTTACTTTGGATTAGAAAAATCAGGAAACAAAGGCCCGTGGAGAATTCCAGTTGGTTGCCCGTTCGAGCGGCTGCGGGATGGAGTAATCATAGCAGATTAACTGATGGAACAACAACTCAAGGCTCACCTCTGCGTAATATAAATCTTGGATTGAAAATCTTCTTGCATGATCTTCAACTTGCAACGGAGAATTTCAAAGCAGAGAGGATAATTGGAAAGGGTGGTTTTGGAAATGTTTATAAGGGAGTTCTCGAGAATGGAAAGAGTGTGGCAGTGAAAAGAAGTGAACCAGGATCAGGTCAAGGACTTCCTGAATTTCAAGCTGAGATAATGGTTTTGTCCAAAATTCGTCACAGACACCTTGTTTCCTTAATAGGGTATTGTGATGAAAGGTTTGAGATGATACTTGTTTACGAGTACATGGAAAAAGGGACACTTAGAGACAATTTGTACGGTACAAATTTGCCTAGTATTTTGAGTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCTGCTAGAGGTCTTCATTATCTTCACAAAGGAGCTACTGGTGGAATCATTCACCGTGATGTGAAATCCACAAACATATTGCTTGATGAGAATCTTGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGAACTGGTCCTCTTGATCAGCATTCTTATGTCAGCACAGGTGTTAAAGGAACTTTTGGTTATCTCGACCCAGAGTACTTTAGATCACAACAACTTACAGAAAAATCTGATGTTTATTCATTCGGCGTGGTTCTACTTGAAGTGTTGTGCGCAAGACCAGCCCTTGATCCCACGCTTCCAAGGGAACAGGTGAACTTGGCTGAGTGGGGAGTTTTTTGCAAAGACAAAGGGATATTGGAAGATATAATTGATCCCACCATTAAGGGACAGATTGATCAAAACTCACTAAGAAAATTTAGTGAGGCATTTGAAAAATGCTTACAAGATGATGGCAGTGATAGGCCTTCAATGGGTGATGTATTGTGGGACTTGGAATATGCTTTGCAGCTTCAGAGAGGTACAATACAGAGAGAACCTCATGAGGATAGTTCCAGCAGTGTTTCTGTATCAATTCAACTGCCAAATGTTCGCCGTTTTCCTTCGCTGTCTACACTGAGTGAAATTGATGACATGTCTATTGGGAGGATTACTGATGAATCAGTTAATGCAGAGGATTCTGTTTTCTCTCAGTTGAATATTGGTGATGCTAGATAG 2535 0.389 MATQHSLLLLTFLLQFSSLQFPSLGLYNLQKTYFINCGSDTDVEQNNNNYIGESDPNYPEKLFGISSTMTSQSSVPSTLYQTARIFNSESSYEFTTIPNNTYMVRLHFLSFSSPTNLSSAKFSVSVPGFHLLQNFDAKNTTNSPLIKEYFVKIIRKRFKIIFTPQNSSFAFVNAIELFTLPIHFIPDLVARFSYLSSTGRGLSTYTGDLLSRALETKHRLNVGGETVTRLTDDLSRNWLPDDNYITTPQNAKNISFSGNIKRTANDESDGPNSNQYIAPDTVYQFAKETKNGSNGLSISWSFPVDKNIDHFIRLHFCDFSNLQPGLTTFFLYFYDTYVQNVNDDGTGISLQLNDPYYYDFVVRSDASGIFKVTLTPNVTFSLPNAFLNGLELMKLIEPSGLVPFDDLDSNSKVNLPVVVGLAVGGLVLVFVVVVVLLWIRKIRKQRPVENSSWLPVRAAAGWSNHSRLTDGTTTQGSPLRNINLGLKIFLHDLQLATENFKAERIIGKGGFGNVYKGVLENGKSVAVKRSEPGSGQGLPEFQAEIMVLSKIRHRHLVSLIGYCDERFEMILVYEYMEKGTLRDNLYGTNLPSILSWKQRLEICIGAARGLHYLHKGATGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDQHSYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPALDPTLPREQVNLAEWGVFCKDKGILEDIIDPTIKGQIDQNSLRKFSEAFEKCLQDDGSDRPSMGDVLWDLEYALQLQRGTIQREPHEDSSSSVSVSIQLPNVRRFPSLSTLSEIDDMSIGRITDESVNAEDSVFSQLNIGDAR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02672 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vifa4g02672 844 Gene3D - 30 180 - -
Vifa4g02672 844 Gene3D - 213 395 - -
Vifa4g02672 844 FunFam Receptor-like protein kinase FERONIA 576 793 - -
Vifa4g02672 844 SMART serkin_6 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02672 844 Gene3D Transferase(Phosphotransferase) domain 1 576 796 - -
Vifa4g02672 844 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Vifa4g02672 844 Pfam Protein tyrosine and serine/threonine kinase 501 768 IPR001245 GO:0004672|GO:0006468
Vifa4g02672 844 ProSiteProfiles Protein kinase domain profile. 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02672 844 Pfam Malectin-like domain 35 394 IPR024788 -
Vifa4g02672 844 FunFam Putative receptor-like protein kinase 212 396 - -
Vifa4g02672 844 CDD STKc_IRAK 506 772 - -
Vifa4g02672 844 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vifa4g02672 844 SUPERFAMILY Protein kinase-like (PK-like) 490 805 IPR011009 -
Vifa4g02672 844 FunFam receptor-like protein kinase FERONIA 464 575 - -
Vifa4g02672 844 PANTHER OS07G0166700 PROTEIN 488 778 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02672 Vifa-Chr4 826484451 826486985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02672 7 844 Receptor kinase-like Gene Family AT2G23200 43.468 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa4g02672 Malectin_like 3.6e-30 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02672 - - mtr:25493508 1206.43