Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02666 ATGGAAGCACTTTCATGTTCAATCCCCTCTCCCAATTTCCACACCCACACCAAAACCACCAAAATTCAATCCCCCAATTTCACTTTTCGTCCTCATCCATCTCCAATTTCAATCAAACCTCTCTATTCTTCCAAACTCCTCATTCTCCACCACCACAAACTCCGATCCTCCGCCGAATCCACACACAACCACCATAATCACAATCACAACGATCACAACCATGACCATCACCATCACCATCATCATCACCATCATAATCATTCACATGACATCGATGACGATAATCTCACCGGACCTCAAAGAGCAGTCATCACTTTCGCCAAAGCCACCAAATGGATTGACCTAGCAAATATTCTCAGAGAGCATTTGCATCTATGCTGTTTCTCAACCGCTTTATTTGTAACCGCTGCTATTTGCCCTCATACATTACCAAAATCACTCATCAAACCCTTCCAAAACTCTCTCATTCTCGTAGCCTTTCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTAATTGAAATAACTAGTGGAAAAGTGAGCATCCATGTCTTAATGGCAATGGCAGCTTTTGCATCAGTATTTATGGGAAACTCTTTGGAAGGAGGGTTACTACTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTCACTAGTCGTTCAATGGTTGATGTTCGAGAGTTGAAGGAGAACAATCCAGAGTTTGCACTTGTTCTTAATACAAAAGATGATAAACTTCCTAATACATCTGATTTGGCTTACAAGAGGGTTCCCGTGCATGACATAAACGTAGGATCATATGTGCTTGTTGGTGCTGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCGGTGCCACCATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAATTTAGATGGGAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACTCTAAGCAGAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTACAGCAAAGTTGTCATGGTCTTATCAATTGCTATTGCTGTTCTTGGACCACTTGTATTTAAGTGGCCATTCATCAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCTTTAGGGCTCATGGTTGCAGCATCACCATGTGCCTTGGCCGTGGCTCCATTGGCATATGCCATAGCAATCAGCTCCTGTGCAAAAAAGGGCATATTACTCAAAGGTGGACATGTTCTGGATGCGCTAGCTTCATGCCATACAATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTATATTCAAGGCAGTTGAGCCCATTTATGGTCATCAAATTAGAAACAAGGAATCAAACATTTCTTCCTGCTGCATTCCCACCTGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACTCACCCCATTGGAAGGGCTGTTGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCTGTTGAAAATTTTGAATACTTTCCTGGTAGAGGCCTTACTGCCACTGTTAACAGCATTGAGTCAGGAACTGGAGGTGCTAATCTATTGAAAGCATCCCTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGATGATGAATCAAAAAAGATCAAGGAAGCTATAAATTCATCTCCTTATGGCAGTGAATTTGTTCATGCTGCCCTTCAAATTAATAAAAAGGTCACTTTGATTCACCTGGAGGATAGGCCTCGTCCAGGGGTTTTTGATGTTATTCAAGAACTGCAAGATGAAGCAAAGCTCCGCGTGATGATGTTAACTGGTGATCATGAATACAGCGCAAGGAGAGTTGCAAGTGCTGTGGGTATCAATGAGTTTCACTGCAACCTAAAGCCTGAAGATAAGCTGAGCCATGTAAAGGATATCTCAAGAGAAATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCATCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGAGAAAATATTTCTGCAGTACCATTTTGTATTGCCAAATCCCGCCAAACAACTTCACTGATTAAGCAAAACGTGGCTCTGGCATTGTCTAGCATATTTGTGGCTTCCCTTCCGTCAGTTTTGGGTTTTCTGCCATTGTGGATAACGGTTCTCTTGCATGAAGGTGGAACCCTGCTTGTTTGTCTAAATTCCATACGTGCCTTAAATGAACCATCCTGGTCCTGGAAGCATGATATACTACTGCTGATTGGCGAGGTTAAATCTAGACTCCCCTCTCTTAGGACAAATATAACAAGCTCAAGCAGCATTACAACTGCAAATTTGTGA 2469 0.4281 MEALSCSIPSPNFHTHTKTTKIQSPNFTFRPHPSPISIKPLYSSKLLILHHHKLRSSAESTHNHHNHNHNDHNHDHHHHHHHHHHNHSHDIDDDNLTGPQRAVITFAKATKWIDLANILREHLHLCCFSTALFVTAAICPHTLPKSLIKPFQNSLILVAFPLVGVSASLDALIEITSGKVSIHVLMAMAAFASVFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPEFALVLNTKDDKLPNTSDLAYKRVPVHDINVGSYVLVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSRIVQLTEEAQLNKPKLQRWLDEFGERYSKVVMVLSIAIAVLGPLVFKWPFISTPACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLIFKAVEPIYGHQIRNKESNISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGTGGANLLKASLGSIDFITSFCQSDDESKKIKEAINSSPYGSEFVHAALQINKKVTLIHLEDRPRPGVFDVIQELQDEAKLRVMMLTGDHEYSARRVASAVGINEFHCNLKPEDKLSHVKDISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFVASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRALNEPSWSWKHDILLLIGEVKSRLPSLRTNITSSSSITTANL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02666 822 Gene3D - 441 729 IPR023214 -
Vifa4g02666 822 Pfam haloacid dehalogenase-like hydrolase 446 691 - -
Vifa4g02666 822 SFLD p-type atpase 430 731 IPR044492 -
Vifa4g02666 822 SFLD Haloacid Dehalogenase 430 731 - -
Vifa4g02666 822 MobiDBLite consensus disorder prediction 55 94 - -
Vifa4g02666 822 NCBIfam HAD-IC family P-type ATPase 206 474 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02666 822 NCBIfam HAD-IC family P-type ATPase 585 758 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g02666 822 SUPERFAMILY Calcium ATPase, transduction domain A 256 341 IPR008250 -
Vifa4g02666 822 SUPERFAMILY Calcium ATPase, transmembrane domain M 184 764 IPR023298 -
Vifa4g02666 822 Pfam E1-E2 ATPase 255 428 - -
Vifa4g02666 822 MobiDBLite consensus disorder prediction 8 30 - -
Vifa4g02666 822 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Vifa4g02666 822 Gene3D - 220 346 - -
Vifa4g02666 822 PRINTS P-type cation-transporting ATPase superfamily signature 601 612 - -
Vifa4g02666 822 PRINTS P-type cation-transporting ATPase superfamily signature 624 634 - -
Vifa4g02666 822 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Vifa4g02666 822 PRINTS P-type cation-transporting ATPase superfamily signature 92 106 - -
Vifa4g02666 822 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
Vifa4g02666 822 CDD P-type_ATPase_HM 132 780 - -
Vifa4g02666 822 NCBIfam heavy metal translocating P-type ATPase 182 780 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa4g02666 822 SUPERFAMILY HAD-like 446 778 IPR036412 -
Vifa4g02666 822 MobiDBLite consensus disorder prediction 69 86 - -
Vifa4g02666 822 MobiDBLite consensus disorder prediction 1 30 - -
Vifa4g02666 822 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 50 820 - -
Vifa4g02666 822 Gene3D - 459 609 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02666 Vifa-Chr4 824692484 824701004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02666 80 806 Primary Pumps ATPases AT4G37270 74.415 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02666 K01534 - gmx:100776309 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02666 4 824692484 824701004 Vifa4g02666 4 824692484 824701004 ECH