Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02665 ATGACCGATACGAAAATCCCCAAAAACCTAACCTCCCAAACCGTTTCCCCTCACCCACCCATAACCCTCACACATATAAACCAACGCAATTCCAACTTCTCTCACAACAAAATCTCAAACGCTCCACAACCCTCAAACCAAAACCTTCTCCCAATTATGGATCGGATCAAAGGCCCGTGGAGCCCCGAAGAAGACGATGCCCTAAAGAACCTCGTCGACCGCCACGGCCCGCGTAACTGGTCTCTCATCAGCCGTGCTATCCCCGGCCGGTCTGGTAAGTCCTGCCGCCTCCGTTGGTGTAACCAGCTTTCTCCTCAAGTTGAGCATCGGGCTTTTACTCCTGAAGAAGATAGTCTCATCATCAGAGCCCATGCCCAGGTCGGTAACAAATGGGCCACAATAGCCCGGTTACTCTCCGGCCGAACTGATAACGCTATTAAAAACCACTGGAACTCAACTCTCAAGCGTAAGTGTTCGTCTTTCATGGCTTCCGACGATTCATCCTTCAATCCTCCGCCGCTCAAACGCTCTGCTAGCGTCGGCGCGCCGGGGAGTCCTTCCTGTTCTGATTTAAGCGATTCCGGAAACCATATCTTCCGTCCTGTTCCGGTTCGATTACCTGTCGAATCAATAACATCCGAACGAGAGCAGGAAAGAGAACAGGAGGAAGATGACGGTCTGTTAACATCGCTTTCGCTCTCGCTTTCTCTTCCAGGCGTGGATAAATCAGATGTGGTTAACCGTCAACCGTCGATAAGCCCTTCTCCGATAAGCGCTGTAACGGCTTCTGTGGCGGCGAAAGTTTCTCAGGAAGTTGGAATCGGAGCGTTGAATTTGAGTGGTGAATTCATGGCGGTTATGCAGGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCGTAATGGAATGTGTTTTCAGGGAGTGGATAGGCTCAGAAACGTTTCTGCTAAACCAATTGGGATTAACATTAGCAGGGTTGATTCCTAA 993 0.4985 MTDTKIPKNLTSQTVSPHPPITLTHINQRNSNFSHNKISNAPQPSNQNLLPIMDRIKGPWSPEEDDALKNLVDRHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDSLIIRAHAQVGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMASDDSSFNPPPLKRSASVGAPGSPSCSDLSDSGNHIFRPVPVRLPVESITSEREQEREQEEDDGLLTSLSLSLSLPGVDKSDVVNRQPSISPSPISAVTASVAAKVSQEVGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINISRVDS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02665 330 SMART sant 108 156 IPR001005 -
Vifa4g02665 330 SMART sant 56 105 IPR001005 -
Vifa4g02665 330 CDD SANT 59 101 IPR001005 -
Vifa4g02665 330 Pfam Myb-like DNA-binding domain 60 119 - -
Vifa4g02665 330 FunFam MYB transcription factor 57 108 - -
Vifa4g02665 330 Gene3D - 56 108 - -
Vifa4g02665 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 107 IPR017930 -
Vifa4g02665 330 CDD SANT 111 154 IPR001005 -
Vifa4g02665 330 PANTHER MYB PROTEIN-RELATED 57 211 - -
Vifa4g02665 330 SUPERFAMILY Homeodomain-like 54 150 IPR009057 -
Vifa4g02665 330 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g02665 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 158 IPR017930 -
Vifa4g02665 330 MobiDBLite consensus disorder prediction 165 194 - -
Vifa4g02665 330 Gene3D - 110 172 - -
Vifa4g02665 330 ProSiteProfiles Myb-like domain profile. 57 103 IPR001005 -
Vifa4g02665 330 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02665 Vifa-Chr4 824025358 824026350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02665 53 301 MYB Transcription Factor Family AT4G37260 51.601 2.84e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g02665 Myb_DNA-bind_6 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02665 K09422 - gmx:100806145 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07284 1 1124412670 1124413617 Vifa4g02665 4 824025358 824026350 ECH
Vifa4g02665 4 824025358 824026350 Vifa4g02665 4 824025358 824026350 ECH
Vifa4g02665 4 824025358 824026350 Vifa1g07284 1 1124412670 1124413617 PCT