Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02654 ATGTCTCTCCCACAATCACCTTCTTTCCTCGCCACCCTTCTCTGTGAAGAGCAAAACTTTGAAGATGATGATTCCGATGCAACCATTACCGATTCTGAAACCGTTTTCGATGACCCATCTGGGGCTAAGCTGCAAAAGCTGCAATCTTTACCTTTGTTTTGGGAAGACGATGAGCTTGTTTCGTTGATTTCTAAAGAGGGTCAGACCCATTTGTGTTGTGGTGATGTTATTGTTGATGGATCTTTGGATGAGATTCGCGTTGAAGCTGTGAACTGGGTTTCCAAAGTTTGTGCTCATTATGGGTTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTATTACTAGTTTGAGGTTTCAGAAGGATAAACCTTGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAGGAAACCCATGTGCCGCTTCTTTTAGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAGACTATACAGAGAATGGAGCTTTTGGTGTTGTCTACTCTGAAATGGAGGATGCATCCGGTGACACCGATTTCCTTCTTTGAACATATTGTTAGAAGGCTTGGTTTGAAGAGCCGTTTGCACTGGGAGTTTATGTGGCGTTGTGAGAGGGTCCTTCTTCATGTTATTGCTGATTCAAAGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTAATCAGCTATTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAACCAATGCTACAAGCTTATGCTGAAGCTATTAGTTTGCGATGATGGCATTTATAGTCTTCACCAGAAACGGAAGCGAGTATCTGAACCAAGTAGCCCGGGTGGTGTCATTGACGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACCGCAGCATCGTCCGTTTCGCTTTCACAACAGCCTATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGACTTCCTTCTGTGAATCGCGTGTCTATTGATGTTCTTAATAGCCCTCGTTAA 1092 0.4185 MSLPQSPSFLATLLCEEQNFEDDDSDATITDSETVFDDPSGAKLQKLQSLPLFWEDDELVSLISKEGQTHLCCGDVIVDGSLDEIRVEAVNWVSKVCAHYGFSTLTTVLAVNYFDRFITSLRFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIADSKVMMSYLPSTLAAATMIHVIKEIEPFNATEYINQLLGLLKISEEQVNQCYKLMLKLLVCDDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNDSWTAASSVSLSQQPMFKRSRAQDQQMRLPSVNRVSIDVLNSPR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02654 363 Pfam Cyclin, N-terminal domain 84 185 IPR006671 -
Vifa4g02654 363 Gene3D - 187 277 - -
Vifa4g02654 363 PANTHER CYCLINS 77 284 IPR039361 -
Vifa4g02654 363 Pfam Cyclin, C-terminal domain 188 284 IPR004367 -
Vifa4g02654 363 FunFam CYCLIN D32 187 277 - -
Vifa4g02654 363 SMART cyclin_7 91 179 IPR013763 -
Vifa4g02654 363 SMART Cyclin_C_2 188 317 IPR004367 -
Vifa4g02654 363 SUPERFAMILY Cyclin-like 189 291 IPR036915 -
Vifa4g02654 363 CDD CYCLIN_AtCycD-like_rpt2 188 279 - -
Vifa4g02654 363 CDD CYCLIN_AtCycD-like_rpt1 86 183 - -
Vifa4g02654 363 FunFam D3-type cyclin 79 186 - -
Vifa4g02654 363 SUPERFAMILY Cyclin-like 52 186 IPR036915 -
Vifa4g02654 363 Gene3D - 84 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02654 Vifa-Chr4 818797044 818798545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02654 10 353 Core Cell Cycle Gene Families AT5G67260 51.989 1.84e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02654 K14505 - gmx:100785030 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03640 2 1060478359 1060479702 Vifa4g02654 4 818797044 818798545 ECH
Vifa4g02654 4 818797044 818798545 Vifa4g02654 4 818797044 818798545 ECH