Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02643 ATGGCAGTAGAACTCATGACAGGTTACAACACAACGAAAACCTTCACATCCATAGCCGAACAAAATGCTGTCCAAGAAGCAGCTTCTGGCTTAGAAAGCGTTGAAAAACTCATCCAATTACTCTCCCAAGCACGCCATAAGTATCAAAACTCTTCATCTTCCTCTTCCTTCTCACCCTCAAATCCCAACAACAACAACAACGCTTCCATGGAGATTGAAAGAGACTGCAAAGCCGTCGCTGACATCGCTGTTTCCAAATTCAAACGAGTTATTTCACTTCTTGAAAAAACCAGAACCGGCCACGCTCGTTTCAGAAAAGCACCTCTACCGCAAACTCAACCTGAACAACCAATCTTCAACGCTACACCTCTTCAACAGATTCCTCCTCCTCCAACAACAACAACAACAACTACAACCCTTCACCGTCCTATAATCAAGAGAAACGATTCCTCAAAGACCCTCAATTTTTCCTACTCCTCCGCTGCTAATTCCTTCATTTCATCACTCACCGGCGAGACGGACAACAAACACCAACCCTCGGCTTCCTCGCCGGCCGGAGGTTTTCAGATCACGAATCTGTCTCATGTTTCGTCTGTTGGTAAGCCCCCACTGTCTTCTTCTATGATGAAAAGAAAGTGCAGCTCTGAAACTTTGGGTTCTGGAAAGTGCGGTAGTTCTTCTAGCCGCTGTCATTGTTCCAAGAAAAGGAAATTGAGATTGAAGAGAGTTGTTAGGGTTCCTGCAATCAGTTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGAAAATATGGCCAGAAACCTATTAAGGGTTCTCCTCATCCAAGAGGGTACTACAAGTGCAGTAGTGTGAGAGGGTGTCCAGCAAGAAAACATGTAGAAAGAGCACTTGATGATGCATCTATGTTGGTGGTAACCTATGAAGGAGAGCACAACCACTCACTTTCTGCAGCAGATGCAACTAATCTCATTTTAGAATCATCTTAA 993 0.4421 MAVELMTGYNTTKTFTSIAEQNAVQEAASGLESVEKLIQLLSQARHKYQNSSSSSSFSPSNPNNNNNASMEIERDCKAVADIAVSKFKRVISLLEKTRTGHARFRKAPLPQTQPEQPIFNATPLQQIPPPPTTTTTTTTLHRPIIKRNDSSKTLNFSYSSAANSFISSLTGETDNKHQPSASSPAGGFQITNLSHVSSVGKPPLSSSMMKRKCSSETLGSGKCGSSSSRCHCSKKRKLRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDASMLVVTYEGEHNHSLSAADATNLILESS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02643 330 FunFam WRKY transcription factor 65 241 318 - -
Vifa4g02643 330 Gene3D WRKY domain 245 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g02643 330 MobiDBLite consensus disorder prediction 49 68 - -
Vifa4g02643 330 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g02643 330 Pfam Plant zinc cluster domain 210 255 IPR018872 -
Vifa4g02643 330 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 323 IPR044810 GO:0003700
Vifa4g02643 330 MobiDBLite consensus disorder prediction 169 222 - -
Vifa4g02643 330 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g02643 330 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g02643 330 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02643 Vifa-Chr4 811550067 811551474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02643 18 315 WRKY Transcription Factor Family AT2G24570 43.478 1.88e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g02643 WRKY 9.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02643 - - gmx:100788748 377.481