Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02640 ATGCTTCGTTTAATACTATTTCTCTTCTTCTACTCCCTCACCTTCACAGTATCTTCCTCAACAAACTCAACCCTCCCTCAAGACGCCATATCATTACTCTCCTTCAAACAAACCGCCGACCAAACCAACAAACTCCTCTACACACTCAACGAGCCCTACGACTACTGCCAATGGCAAGGCGTAAAATGCGCGCAGGGCAGAGTAGTCCGCTTCGTCCTCCAAAGCTTCTCCCTAACCGGTTTCTTCCCTCCCAACACCCTAACCCGCCTCGACCAACTCCGAGTCTTGAGCCTCCGTAACAACTCCTTATCCGGACCCATCCCGGATCTCTCACCTCTCATCAACCTCAAATCACTCTTCCTCGACCGGAACAACTTCTCCGGTTCTTTCCCTCCTTCCATTCTCTTCCTCCACCGCCTCATTACTCTCTCCCTCTCTCATAACAACCTCACCGGTTCACTTCCGCTTCGGTTAACCCTCCTCGACCGTCTCATTTCGCTTCGACTCGACTCCAACTCCTTCACCGGTCCTCTTCCTCCTCTCAACCAAACCGAATTAAAACTATTTAACGTCTCTACCAATAACCTCACCGGTCCGGTTCCTGTCACTCAAACTCTCACACGCTTCAAACCGCTGTTTTTTTCTCAGAATCCCGGTCTCTGCGGTGAGATTATTCACAAACAATGTACTCATCGTTCTAGATTCTTCGGTTCATCAAACGCCACCGTTTCTTCCTCTGCACCGTTGAGTCAGAGCGCCGAATCGCAAGTTTTTACGCTGATTATAATCGGGTTAGTTAGAAAAAACAACACCGGAGCAATATCGAAATCAAAATCTGAATCATCGGCGTCGGAAACTATACCGGCGGTGGCGGGATTGGAGGCAAGAACCGAAGTGGAAGCCGTTACGAAGGTGAAGATGATGGAGGAAGCGCATAGGAGTGGGAAGTTAGTGTTCTGCTGTGGGGAGGTGCAGGAGTATACGTTAGAGCAGCTGATGAGAGCTTCGGCGGAGCTTTTGGGAAGAGGGAGTGTGGGGACCACTTACAAGGCGGTGATGGATTCAAAGGGGATATTGACGGTGAAGAGGCTGGACGCCGGAAAAAGTGGTGTGATGAGTGGTGAAGAATTTCAGAAGCATATGGAGATTGTGGGGAGACTTCGGCATCCTAATTTGGTTCCTTTGAAGGCTTTTTTCCAAGCGAAAGGAGAGAGGCTTGTTATCTATGATTTTCAACCTAATGGAAGCCTCTTCAATCTTGTTCATGGTTCAAGATCAGCGAGAGCGAAGCCGCTGCATTGGACGTCATGCTTAAAAATAGCAGAAGATGTAGCTCATGGACTTGCTTATATACATCAAGTTTCGTCCTTGATTCATGGAAATCTAAAATCCTCTAATGTCCTTCTTGGAGGAGACTTTGAAGCTTGCATAACCGACTATTGTTTGGCCTTCCTTATGGATTCTTCATTCACAGAAGATCCTGATTCTGCAGCCTACCAAGCCCCCGAGGTTCGAAAATCTTACCGCAGGGCAAGTTCCAAGTCTGATGTGTATGCTTTTGGTGTGCTGCTGTTGGAGCTTTTGACGGGCAAACATCCTTCCAAACATCCTTTCCTTGCGCCAATGGAGTTACAAGACTGGGTTAGAGCTATGAGGGATGATGATTTTAGCGAAGATAACCGGTTAGAAATGCTCACCGAAGTCGCCAGTATTTGCAGTGCGACATCACCGGAGCAGAGGCCAGCTATGTGGCAAGTTCTTAAGATGATACAAGGAATAAAGGATAGTATTTCTATGGAGGACACTGAACTCACTGGAGTGACATAG 1827 0.4784 MLRLILFLFFYSLTFTVSSSTNSTLPQDAISLLSFKQTADQTNKLLYTLNEPYDYCQWQGVKCAQGRVVRFVLQSFSLTGFFPPNTLTRLDQLRVLSLRNNSLSGPIPDLSPLINLKSLFLDRNNFSGSFPPSILFLHRLITLSLSHNNLTGSLPLRLTLLDRLISLRLDSNSFTGPLPPLNQTELKLFNVSTNNLTGPVPVTQTLTRFKPLFFSQNPGLCGEIIHKQCTHRSRFFGSSNATVSSSAPLSQSAESQVFTLIIIGLVRKNNTGAISKSKSESSASETIPAVAGLEARTEVEAVTKVKMMEEAHRSGKLVFCCGEVQEYTLEQLMRASAELLGRGSVGTTYKAVMDSKGILTVKRLDAGKSGVMSGEEFQKHMEIVGRLRHPNLVPLKAFFQAKGERLVIYDFQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSSLIHGNLKSSNVLLGGDFEACITDYCLAFLMDSSFTEDPDSAAYQAPEVRKSYRRASSKSDVYAFGVLLLELLTGKHPSKHPFLAPMELQDWVRAMRDDDFSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSISMEDTELTGVT 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02640 608 SUPERFAMILY L domain-like 24 222 - -
Vifa4g02640 608 Gene3D Transferase(Phosphotransferase) domain 1 413 605 - -
Vifa4g02640 608 ProSiteProfiles Protein kinase domain profile. 334 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02640 608 Gene3D Ribonuclease Inhibitor 138 230 IPR032675 -
Vifa4g02640 608 SUPERFAMILY Protein kinase-like (PK-like) 338 594 IPR011009 -
Vifa4g02640 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 595 IPR046959 -
Vifa4g02640 608 Pfam Protein kinase domain 337 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g02640 608 ProSiteProfiles Leucine-rich repeat profile. 92 114 IPR001611 GO:0005515
Vifa4g02640 608 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Vifa4g02640 608 FunFam Probable inactive receptor kinase At5g67200 27 137 - -
Vifa4g02640 608 Gene3D Phosphorylase Kinase; domain 1 296 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02640 Vifa-Chr4 810302038 810304925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02640 22 601 Receptor kinase-like Gene Family AT3G50230 53.120 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa4g02640 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02640 - - gmx:100783086 842.802