Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02639 ATGGAACAATCGGAGAATTGTTCCGTTAAAGTGGCTCTTCACATTCGTCCTCTCATTGCTGATGAACGTCAACAAGGTTGCGCTCAATGTGTTTCTGTTAACCCTGGAAAGCCTCAGGTTCAAATAGGGTCTCATTCCTTTACATTTGATCATGTTTATGGAAATGGTGGATCTCCTTCATCTCAAATGTTTGAAGAGTGCGTTGCTCCGTTGGTTGACGGCTTATTTCAAGGATACAATGCTACTGTGCTTGCTTATGGTCAGACAGGATCCGGAAAAACATATACAATGGGAACTGCCTTCAATGACAATAGTGGGATTGGATTGATTCCTCAGGTTATGAATGCCTTGTTCAACAAGATTGAAACTCTAAAGCATCAAACGGAATTTCAATTGCATGTTTCCTTTATCGAGATTTTGAAGGAAGAGGTAAGGGACTTGTTGGACACGGTATCAATGGGCAAATCAGATAACTCTGTCTCTAATGGCCATTATGGAAAAGTAACTATTCCTGGGAAATCACCTATACAAATTCGTGAATCGTCAAGTGGAGTAATAACACTGGCAGGGTCAACTGAAGTTTCTGTAAGTACATTACAGGAGATGGCCGCTTATTTGTATCAGGGTTCATTAAATAGAGCAACAGGAAGTACAAACATGAACAACCAATCCAGTCGGTCACATGCCATCTTCACAATTACATTAGAACAGATGCGCAAACTCCATTCATTTTCTTCCAGCAATGACACTTCAGATGAGGATATGGGCGAAGAATACCTTTCAGCAAAGCTCCATTTGGTAGATCTAGCTGGATCAGAGCGAGCTAAAAGAACTGGTTCTGATGGTCTTCGTTTAAAAGAAGGTATACACATCAATAGAGGTCTTCTTGCACTTGGTAATGTCATAAGTGCACTAGGGGATGAGAAAAAGCGAAAGGAGGGTGTGCATGTCCCTTATCGCGATAGCAAACTCACTCGACTCTTACAGGATTCACTTGGAGGAAACAGTAAAACTGTCATGATAGCTTGCATTAGCCCTGCTGACATCAATAATGAGGAAACTCTTAATACCCTTAAGTATGCAAACCGTGCACGTAACATTCAAAATAAGCCTGTTGCTAATCGAGATTTGATATCCAATGAGATGCAGCAAATGCGCCAGCAGCTAAAGTACTTGCAGGCTGAGCTCTGTTCTCGAGGAGGAGGTTCAGTTGATGAAGTGCAGGTTCTTAAAGAAAAGATTGCTTGGCTTGAGGAAACTAATGAGGAACTCTGTCGAGAACTTCATAAATATCGCAGTAGAGCTTCTTTAGTAGAAAGATGTGATATTCCTGAAACAGATGCACATATTTATCTCATGAAAAATAACGGGCTTGAGAGGCGCTTCACAGGTTCAGAGTTATCTGACCATCTAGTGGCGGGAAGCATGTCAGGTGAGGATTCAAAGGAAGCTGATGAAGTAGAAAAAGAATTGGAGCATACACTACTGCTAAATACCATGGATAAAGAGATGCACGAGTTAAATAAGCAATTGGAGCAGAAAGAGACAGAGATGAAGCTCGTGGGAGTTGATACTGAAGCACTCAGGCAGCACTTTGGAAAGAAAATGATGGAACTGGAGGAAGAGAAAAGAAAAGTACAGCAAGAAAGGGATCGGTTATTGCATGAAGTAGAGAATCTTGCAGTTAATTCAAATGGACTGGCACATAAACCACATGATGTTCGTGGCCAAAAATTGAAAGCATTGGAAGCACAGATTTTAGAGCTCAAGAAGAAACAAGAAAACCAGGTGCAGCTACTAAAGCAAAAGGAAAAGAGTGAAGATGCTGCCAAAAGACTGCAAGCTGAGATCCAGTATATCAAGGCTCAAAAGGTTCAGTTGCAGCATAAAATAAAACAAGAGGCAGAACAATTTCGACAATGGAAGGCTTCCCGTGAAAAGGAGTTACTCCAGTTAAAAAAGGAGGGAAGAAGGAATGAGTATGAAAGGCATAAACTTGAGGCTCTAAACCAGCGCCAGAAAATGGTTCTTCATAGAAAGACAGAGGAAGCAACAATGGCTACTAAAAGGCTAAAGGAATTGTTGGAAGCTCGCAAATCTTCTCCGCGTGACCACTCTGTTTATTCAAATGGACATCTACAGCCTGGGCAGATCAATGAAAAATCGCTCCAGAGGTGGCTTGACCAGGAGCTGGAGGTAATGGTACATGTGCATGAAGTCCGTGCTGAATTTGATGAACAAAACAAAGTTCATGCTGCACTGGAAGGAGAATTGGCTTTCCTGAAACAAGTGGATCAGCTTTCAGATAGGCAGAGTATCCCCACAGGAAACAGTCGATATTCAAGATTGTTATCCATGTCACCAGAAGCAAAAGCTGCGAGAATAACTTCTCTCGAGAACATGCTAGGCACGTCTTCAGCGGCTTTGAAAGCCATGACTTCACAACTTACCGAGGCAGAAGAAAGGGAACGTGCATTAAATAACCGTGGACGTTGGAATCAGTTACGCTCAGTGGGAGAGACAAAAAATGTGCTTCTGTATCTGTTCAATGCTACCGCAGAAGCAAGGATCCAATTGTGGGAAAAGAATAAGGAACTGAAGGACTTAAAAGAGCAACTTAATGAGCTTGTAACACTACTACAACAAAGTGAAGCACAGAGAAAGGAACTTGAAAAAGAGAAAGCGATTGGGGAACAAGCAGTTGCCATCACATTGCATACACCACTATCGGACAGCTCACGGTCCTTGAAACACCTTGCGGATGAAATGAGTGGTCCGTTGTCCCCAATGTCGCATCCTGCACCAAAACAACTCAAATTCACCCCTGGAATTGTTAATGGGTCAGTGAGGGAGTCAGTTACATTTATAGATGATGGACGGAAGATGATACCTATTGGAGATTTGTCAATGAAGAGACTAGCAGCTATAGGACAAGCCGGAAAACTTTGGAAGTGGAAGAGAAGTCATCATCAATGGTTGCTACAGTTTAAATGGAAGTGGCAGAAGCCCTGGAAACTCTCAGAATTGATCAAACACAGTGATGAAACAATCATGAAGTCAAGGCCTAGAGCGCAAGCTTTGATTAATGTGGTAATCTCTACCGTGTTATTTCTCATGTCTATTATAATTGTGTATCGAGCTCACAACGTCCATAAACTTGCTTGA 3165 0.4202 MEQSENCSVKVALHIRPLIADERQQGCAQCVSVNPGKPQVQIGSHSFTFDHVYGNGGSPSSQMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTAFNDNSGIGLIPQVMNALFNKIETLKHQTEFQLHVSFIEILKEEVRDLLDTVSMGKSDNSVSNGHYGKVTIPGKSPIQIRESSSGVITLAGSTEVSVSTLQEMAAYLYQGSLNRATGSTNMNNQSSRSHAIFTITLEQMRKLHSFSSSNDTSDEDMGEEYLSAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINNEETLNTLKYANRARNIQNKPVANRDLISNEMQQMRQQLKYLQAELCSRGGGSVDEVQVLKEKIAWLEETNEELCRELHKYRSRASLVERCDIPETDAHIYLMKNNGLERRFTGSELSDHLVAGSMSGEDSKEADEVEKELEHTLLLNTMDKEMHELNKQLEQKETEMKLVGVDTEALRQHFGKKMMELEEEKRKVQQERDRLLHEVENLAVNSNGLAHKPHDVRGQKLKALEAQILELKKKQENQVQLLKQKEKSEDAAKRLQAEIQYIKAQKVQLQHKIKQEAEQFRQWKASREKELLQLKKEGRRNEYERHKLEALNQRQKMVLHRKTEEATMATKRLKELLEARKSSPRDHSVYSNGHLQPGQINEKSLQRWLDQELEVMVHVHEVRAEFDEQNKVHAALEGELAFLKQVDQLSDRQSIPTGNSRYSRLLSMSPEAKAARITSLENMLGTSSAALKAMTSQLTEAEERERALNNRGRWNQLRSVGETKNVLLYLFNATAEARIQLWEKNKELKDLKEQLNELVTLLQQSEAQRKELEKEKAIGEQAVAITLHTPLSDSSRSLKHLADEMSGPLSPMSHPAPKQLKFTPGIVNGSVRESVTFIDDGRKMIPIGDLSMKRLAAIGQAGKLWKWKRSHHQWLLQFKWKWQKPWKLSELIKHSDETIMKSRPRAQALINVVISTVLFLMSIIIVYRAHNVHKLA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02639 1054 Coils Coil 809 829 - -
Vifa4g02639 1054 ProSitePatterns Kinesin motor domain signature. 262 273 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa4g02639 1054 Coils Coil 375 395 - -
Vifa4g02639 1054 ProSiteProfiles Kinesin motor domain profile. 8 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 PRINTS Kinesin heavy chain signature 218 235 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 PRINTS Kinesin heavy chain signature 317 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 PRINTS Kinesin heavy chain signature 263 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 CDD KISc_KIF4 7 368 - -
Vifa4g02639 1054 Coils Coil 677 697 - -
Vifa4g02639 1054 Coils Coil 579 630 - -
Vifa4g02639 1054 SMART kinesin_4 6 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa4g02639 1054 Coils Coil 497 517 - -
Vifa4g02639 1054 Gene3D Kinesin motor domain 1 395 IPR036961 -
Vifa4g02639 1054 Coils Coil 529 563 - -
Vifa4g02639 1054 Coils Coil 852 900 - -
Vifa4g02639 1054 FunFam kinesin-like protein KIN-4A isoform X1 2 395 - -
Vifa4g02639 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 398 IPR027417 -
Vifa4g02639 1054 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 914 IPR027640 GO:0003777|GO:0007018
Vifa4g02639 1054 Coils Coil 407 434 - -
Vifa4g02639 1054 Pfam Kinesin motor domain 16 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02639 Vifa-Chr4 810166607 810175259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02639 49 400 Calmodulin-binding Proteins AT5G65930 35.511 2.83e-52 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02639 - - gmx:100790341 1681.38